BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2726.p
         (555 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094692|ref|YP_001099767.1| malonate decarboxylase subunit ...   942   0.0  

>gi|134094692|ref|YP_001099767.1| malonate decarboxylase subunit
           alpha [Herminiimonas arsenicoxydans]
          Length = 550

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/552 (82%), Positives = 493/552 (89%), Gaps = 9/552 (1%)

Query: 8   WNARQKNREQRLARATAALGSQLQGKIAPADQLGELLYAVLENGDRVCVEGNNQKQADFL 67
           WN   +NR +R+AR  A     + G+IA   ++  LL AV+E+GDRVC+EGNNQKQA+FL
Sbjct: 4   WNLLSENRGKRIARGLA-----ITGRIADPGKIVALLEAVIESGDRVCLEGNNQKQANFL 58

Query: 68  AKGLAALDPARVNGLHMLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLASAGKL 127
           A  L ALDPARV+ LHML SVLALPEHLD+F+KGIA RLDFSFSGPQA RLA+L + GK+
Sbjct: 59  AGALCALDPARVHDLHMLLSVLALPEHLDIFDKGIASRLDFSFSGPQAVRLARLVATGKI 118

Query: 128 NIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFSSGIV 187
           NIGAIHTYLELFGRYF+DLTPRVALVAAQAADR GNLYTGPNTEDTPAI EATAF +GIV
Sbjct: 119 NIGAIHTYLELFGRYFIDLTPRVALVAAQAADRQGNLYTGPNTEDTPAIVEATAFKNGIV 178

Query: 188 IAQVNEIVDELPRVDIPADWVSFAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIY 247
           IAQVNEIVD LPRVDIPADWV F + APTPHYIEPLFTRDPA ISE+QVLMAMMAIKGIY
Sbjct: 179 IAQVNEIVDVLPRVDIPADWVDFVVPAPTPHYIEPLFTRDPALISEVQVLMAMMAIKGIY 238

Query: 248 AEYGVQRLNHGIGFDTAAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGFVESV 307
           AEYGV+R+NHGIGFDTAAIELILPTYAESLGL+GKI +HWALNPHPALIPAIEAGFVESV
Sbjct: 239 AEYGVERINHGIGFDTAAIELILPTYAESLGLKGKIGRHWALNPHPALIPAIEAGFVESV 298

Query: 308 HSFGSELGMEDYIRARPDVFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQGNSS 367
           HSFGSELGME YI ARPDVFFVG DGSMRSNRA SQ AGHY CDMFIGSTLQID+QGNSS
Sbjct: 299 HSFGSELGMERYIEARPDVFFVGRDGSMRSNRAMSQVAGHYACDMFIGSTLQIDMQGNSS 358

Query: 368 TATLGRIAGFGGAPNMGADARGRRHASEAWLKAGQQARAG----RNTIPRGQKLVVQTVE 423
           TATLGRI+GFGGAPNMG+DARGRRH S AWLKAG+QAR      +  +PRGQKLVVQ VE
Sbjct: 359 TATLGRISGFGGAPNMGSDARGRRHPSAAWLKAGEQARQQTSQEKKKMPRGQKLVVQIVE 418

Query: 424 TFREHMQPAFVEKLDAWQLGEQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQ 483
           TFREHMQPAFVE+LDAW++ EQAK+ IPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQ
Sbjct: 419 TFREHMQPAFVEELDAWKVAEQAKLAIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQ 478

Query: 484 AIRGVAGYTAVGMGRDKRMVENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASG 543
           AIRGVAGYT VGM RDK+MVENLRDRGII RAED+GIDKRMATRDLLAAKNMKDLVRASG
Sbjct: 479 AIRGVAGYTPVGMARDKKMVENLRDRGIILRAEDMGIDKRMATRDLLAAKNMKDLVRASG 538

Query: 544 GLYNPPKRFRNW 555
           GLY PPKRFRNW
Sbjct: 539 GLYAPPKRFRNW 550


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,092,719
Number of extensions: 47238
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 469
Effective length of database: 716,977
Effective search space: 336262213
Effective search space used: 336262213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)