BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2723.p
         (246 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094695|ref|YP_001099770.1| malonate decarboxylase subunit ...   345   1e-96

>gi|134094695|ref|YP_001099770.1| malonate decarboxylase subunit
           MdcE [Herminiimonas arsenicoxydans]
          Length = 238

 Score =  345 bits (884), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 165/230 (71%), Positives = 192/230 (83%)

Query: 10  VDWRALAQELFPQGHAITEQEYFLSGTAQVDGSTVTVVGTTGHTPIGIEIALAQASVILQ 69
           ++W+ LA ELFP+GH I E+++FL G A + G   TV+GTTGHTPIG+EIALAQA  IL+
Sbjct: 1   MEWQKLAAELFPEGHDIVERDFFLRGNATISGRVATVIGTTGHTPIGVEIALAQAHAILE 60

Query: 70  TVREHPGRPIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129
           T+RE PGRP++ILVDTQGQRLRHRDEMLGIN YMAHLGKC++ ARR GH VIGLVYDQAL
Sbjct: 61  TMREFPGRPLIILVDTQGQRLRHRDEMLGINRYMAHLGKCIDRARRNGHPVIGLVYDQAL 120

Query: 130 SGGFITSGLIADACYALPAATIRVMGLPAMARITKVPQERLTELAKSNPVFAPGPENYLR 189
           SGGFITSGL+ADACYALP A IRVMGLPAMARITKVP+E+L ELAKSNPVFAPG ENYL 
Sbjct: 121 SGGFITSGLMADACYALPEAEIRVMGLPAMARITKVPEEKLRELAKSNPVFAPGAENYLN 180

Query: 190 MGGVAEIWNGDLAQALSQALAVDRSADTRAAIGLERGGRKWAQRVIEAVV 239
           MGGV  IW+ DLA  LS+AL    ++D R+  GLERGGRK A+ VI+ V+
Sbjct: 181 MGGVEAIWHDDLAACLSRALQQTDASDRRSERGLERGGRKMARPVIQGVL 230


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 450,159
Number of extensions: 16732
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 167
Effective length of database: 740,042
Effective search space: 123587014
Effective search space used: 123587014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)