BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2721.p
         (307 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094697|ref|YP_001099772.1| 2'-(5''-triphosphoribosyl)-3'-d...   330   4e-92

>gi|134094697|ref|YP_001099772.1|
           2'-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A
           synthase [Herminiimonas arsenicoxydans]
          Length = 307

 Score =  330 bits (847), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 162/275 (58%), Positives = 204/275 (74%), Gaps = 1/275 (0%)

Query: 27  RAFCRLLARLALRSLHQELVLYPKPGLVSRVDNGSHADMTAETFLRSLFALRHYFFQIAT 86
           R  C   A +A+ SLH ELVLYPKPGLVS +DNGSHADM A  F+RSLF+LRHYF ++A 
Sbjct: 31  RNACLATAGIAIGSLHAELVLYPKPGLVSLIDNGSHADMDAGLFMRSLFSLRHYFVRVAH 90

Query: 87  AGLEGAPFHTLQRLAVRAEERMLRATGGVNTHRGAIFALGMLCAAMACCRGRRLPLQPAT 146
           AG    PF  L+ L ++AE+RML ATGG+NTHRGAIF+LG+LCAA   C G  LP+  +T
Sbjct: 91  AGAADVPFGVLKELGIQAEQRMLVATGGINTHRGAIFSLGLLCAAAGYCHGHGLPVSEST 150

Query: 147 VRATLLIQWGDALARHSAAIPGESHSHGQRVAARHAVGGAREEAALGFPSVFEVALPQLQ 206
           +R  L+ QWG AL RHS      + SHG RVA  + + GAREEAA GFP+VF++ LPQL+
Sbjct: 151 LRTVLMSQWGAALERHSMQAASGT-SHGMRVAHLYGISGAREEAAKGFPAVFDIGLPQLR 209

Query: 207 ATLAQGRDAYHARIDTLFALMAQLSDTNVYHRGGAEGAALVRERSAAFLAAGGTARPGWQ 266
            TLA GR +YHA++D LFALMA ++DTN+YHRGG +GA L R+ +  ++A GGTA P W 
Sbjct: 210 NTLAAGRSSYHAQVDALFALMAHMADTNIYHRGGPDGAVLARQAAQGYIALGGTAHPHWY 269

Query: 267 EDAVDCHRLFVARRLSPGGAADLLAAACLVHQASL 301
           + A+DCHR FV+R LSPGGAAD+LAA+  V+Q SL
Sbjct: 270 DTALDCHRQFVSRGLSPGGAADMLAASWFVYQTSL 304


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 433,806
Number of extensions: 14448
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 226
Effective length of database: 733,452
Effective search space: 165760152
Effective search space used: 165760152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)