BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2719.p
         (82 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093345|ref|YP_001098420.1| hypothetical protein HEAR0055 [...    61   8e-12

>gi|134093345|ref|YP_001098420.1| hypothetical protein HEAR0055
          [Herminiimonas arsenicoxydans]
          Length = 81

 Score = 61.2 bits (147), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query: 1  MKVDVYKRPDGDGLFSYLVLPHEEALPDEVANTDWLLHEQNVDFERDGKRHFTLEAEDAF 60
          M++D+Y+R +  G FSY+ +P  + +P+E  NTDW L  + VD E    +      +  F
Sbjct: 1  MRIDIYRRAEHAGHFSYMAVPEGKLIPEEAVNTDWELTNRGVDVEDGATQLENFSIDAPF 60

Query: 61 MQIGEKGYAITHLNE 75
           QI  KGYAIT + +
Sbjct: 61 EQIQAKGYAITSVKK 75


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 178,496
Number of extensions: 6448
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 82
Length of database: 1,000,347
Length adjustment: 52
Effective length of query: 30
Effective length of database: 829,007
Effective search space: 24870210
Effective search space used: 24870210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 121 (51.2 bits)