BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2717.p (310 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (... 150 9e-38 gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminii... 111 5e-26 gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehyd... 110 7e-26 gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herm... 102 2e-23 gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiim... 71 9e-14 >gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (glycolate reductase) [Herminiimonas arsenicoxydans] Length = 327 Score = 150 bits (379), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 96/258 (37%), Positives = 131/258 (50%), Gaps = 13/258 (5%) Query: 48 VLTNGSTGLTADEMRALPHLQLVCALGAGFENIDVAHAQAHGIEIATGAGTNEDCVADHT 107 V+ S L+ + + A P L+ +C + G+ NIDVA A GI + + AD+ Sbjct: 49 VIITSSEKLSGEVITANPQLKAICNVAVGYNNIDVAAATKAGIMVTNTPDVLNETTADYA 108 Query: 108 LGLLLAILRNIAVLDRYTREG---GWRETLPLQPQLAGKRVGIVGMGNIGKKIARRAAAF 164 LL+A R + + Y R G WR L + G +GI+GMG IG+ IARR+ F Sbjct: 109 WTLLMANARRTSESEHYLRAGKWKNWRFDQFLGADVHGATLGILGMGRIGQAIARRSMGF 168 Query: 165 DAEIAYCNRKKRD-DVDYH----YFSDVAQLAGWADCLIVAAPGGAQTLHLINARVLEEL 219 D ++ Y NR + D + H + +L AD LI+ P QT H+I A L + Sbjct: 169 DMQVIYHNRSRLTPDQEAHANNARYVSKEELLRTADHLILVLPYSEQTHHIIGAAELALM 228 Query: 220 GPKGYLVNIGRGSVVDTEALAAALSSGRLAGAGLDVYEGEPKPPASLIGLPNVVLTPHIA 279 P LVNI RG +VD AL AAL R+A AGLDVYE EP + L NVVLTPHI Sbjct: 229 KPTATLVNIARGGIVDDVALIAALREHRIASAGLDVYENEPALHPDFLTLSNVVLTPHIG 288 Query: 280 GWSPEAISASVRQFLRNC 297 + S R+ + +C Sbjct: 289 -----SASEKTRRAMSDC 301 >gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminiimonas arsenicoxydans] Length = 400 Score = 111 bits (277), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 11/250 (4%) Query: 56 LTADEMRALPHLQLVCALGAGFENIDVAHAQAHGIEIATGAGTNEDCVADHTLGLLLAIL 115 +TA+ + L+++ G G ++ D+ A H I +A N VA+H L ++L+ + Sbjct: 104 MTAERIAKAKKLKMIVTAGIGSDHTDLEAANKHNITVAEVTYCNSHSVAEHVLMMILSQV 163 Query: 116 RNIAVLDRYTREGGWR--ETLPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNR 173 RN + +GGW + + L VG V G IG ++ R FD ++ Y +R Sbjct: 164 RNYIPSYKQVIDGGWNIADCVSRSYDLEAMSVGTVAAGRIGLRVLRLLHPFDVKLHYMDR 223 Query: 174 KK-----RDDVDYHYFSDVAQLAGWADCLIVAAPGGAQTLHLINARVLEELGPKGYLVNI 228 + +++ Y S + L D + + P +T H+IN + L+ Y++N Sbjct: 224 HRLPTAVEKELNLTYHSTLESLTKVCDVVTLNCPLHPETEHMINEKTLKNFKRGAYIINT 283 Query: 229 GRGSVVDTEALAAALSSGRLAGAGLDVYEGEPKPPAS-LIGLPNVVLTPHIAGWSPEA-- 285 RG + D +A+ AAL SG+LAG DV+ +P P +P+ +TPHI+G S A Sbjct: 284 ARGKLCDRDAIVAALKSGQLAGYAGDVWFPQPAPKNHPWRTMPHHGMTPHISGTSLTAQT 343 Query: 286 -ISASVRQFL 294 +A R+ L Sbjct: 344 RYAAGTREIL 353 >gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehydrogenase(partial) [Herminiimonas arsenicoxydans] Length = 317 Score = 110 bits (276), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 147/302 (48%), Gaps = 18/302 (5%) Query: 5 LLVLIHLSEESTATIAAHYDILYAP----DRPRRDAMIAGPAKKVAVVLTNGSTGLTADE 60 +++ + + + A +A+ ++ Y P DRP AM+ V ++ T + Sbjct: 11 IVITEFMDDTAVALLASTFETTYKPALVDDRPALLAMLG----NVDALIVRNRTKVDIAL 66 Query: 61 MRALPHLQLVCALGAGFENIDVAHAQAHGIEIATGAGTNEDCVADHTLGLLLAILRNIAV 120 + A P L++V LG G +NIDV +A GI++ G N VA++ +G +A+LR Sbjct: 67 LDAAPKLRVVGRLGVGLDNIDVDACKARGIDVFPATGANAGAVAEYVIGTAMALLREAYT 126 Query: 121 LDRYTREGGW-RETLPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNRKKRDDV 179 T G W R L ++AGK +G++G G IG+ AR A A + + D Sbjct: 127 RSAETAAGTWPRTALSNGREIAGKTLGLIGFGGIGQLTARLAQALGVTVIAHDPLLAPDA 186 Query: 180 DYHYFSDVA-----QLAGWADCLIVAAPGGAQTLHLINARVLEELGPKGYLVNIGRGSVV 234 + VA ++ AD + + P T +LI A L + P L+N RG +V Sbjct: 187 AIWQQAGVACKQLHEVLEQADIVSLHIPLTTNTRNLIGADALARMKPDAVLINTSRGEIV 246 Query: 235 DTEALAAALSSGRLAGAGLDVYEGEPKPPAS-LIGLPNVVLTPHIAGWSPEA---ISASV 290 D ALA AL S L GA +DV+ EP P + L P V+LTPHIAG + E+ +SA + Sbjct: 247 DEAALAQALHSANLGGAAIDVFAQEPLAPGNALANAPRVILTPHIAGVTTESNTRVSALI 306 Query: 291 RQ 292 Q Sbjct: 307 AQ 308 >gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herminiimonas arsenicoxydans] Length = 336 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 112/232 (48%), Gaps = 17/232 (7%) Query: 63 ALPHLQLVCALGAGFENIDVAHAQAHGIEIATGAGTNEDCVADHTLGLLLAILRNIAVLD 122 A P L++V A G++N DV G+ A+ T+GLLL + R++ D Sbjct: 64 ACPKLKIVFAALKGYDNFDVDACTKRGVWFGIVPDLLTVPTAELTVGLLLGLTRHVMAGD 123 Query: 123 RYTREG---GWRETLPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNRKKRDDV 179 + R G GWR L LAG +GI+GMG +GK IA+R + F+ YC+ + V Sbjct: 124 DHVRSGTFHGWRPKL-YGAGLAGSTIGIIGMGRVGKAIAKRLSGFEMNAVYCDSVPLNPV 182 Query: 180 DYHYFS----DVAQLAGWADCLIVAAPGGAQTLHLINARVLEELGPKGYLVNIGRGSVVD 235 D ++ +L +D ++ P + T HLI+A + ++ YL+N RGSVVD Sbjct: 183 DEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYLLNTSRGSVVD 242 Query: 236 TEALAAALSSGRLAGAGLDVYEGE---------PKPPASLIGLPNVVLTPHI 278 A+ AL+ G LAG DV+E E P A L + TPH+ Sbjct: 243 ENAVVEALNQGHLAGYAADVFEMEEWARPDRPLTVPQALLNNRTQTLFTPHV 294 >gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiimonas arsenicoxydans] Length = 327 Score = 70.9 bits (172), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 114/262 (43%), Gaps = 12/262 (4%) Query: 46 AVVLTNGSTGLTADEMRALPHLQLVCALGAGFENIDVAHAQAHGIEIATGAGTNEDCVAD 105 A+VL T L+ + LP L+L+ G +ID++ A A I I G G + A+ Sbjct: 49 ALVLIRERTALSRPLLEKLPKLKLISQTGKVSGHIDLSAAAARNITIVEGVG-DPTAPAE 107 Query: 106 HTLGLLLAILRNIAVLDRYTREGGWR-ETLP-----LQPQLAGKRVGIVGMGNIGKKIAR 159 T L++A +R + ++G W+ +L L L G+ +GI G G IG+ +A Sbjct: 108 LTWALIMAAMRKLPQYVGNLKDGLWQIASLSSAHNTLGAVLKGRTLGIWGYGRIGRMVAG 167 Query: 160 RAAAFDAEIAYCNRKKRDDV----DYHYFSDVAQLAGWADCLIVAAPGGAQTLHLINARV 215 AF ++ R Y S + AD L + T ++ A Sbjct: 168 YGQAFGMKVLVWGRDASRAAAVQDGYQAASSREEFFSTADVLSLHLRLNDATRGIVTASD 227 Query: 216 LEELGPKGYLVNIGRGSVVDTEALAAALSSGRLAGAGLDVYEGEP-KPPASLIGLPNVVL 274 L + VN R +V ++AL AL GR A LDV+E EP P +SL+ + NV+ Sbjct: 228 LAHMKSSALFVNTSRAELVASDALQTALEQGRPGYAALDVFESEPLAPTSSLLRMENVLA 287 Query: 275 TPHIAGWSPEAISASVRQFLRN 296 +PH+ ++ R N Sbjct: 288 SPHLGYVEKDSYELYFRSAFEN 309 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 586,849 Number of extensions: 23394 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 5 Length of query: 310 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 229 Effective length of database: 733,452 Effective search space: 167960508 Effective search space used: 167960508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)