BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2715.p
         (151 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096162|ref|YP_001101237.1| hypothetical protein HEAR3006 [...   172   9e-45

>gi|134096162|ref|YP_001101237.1| hypothetical protein HEAR3006
           [Herminiimonas arsenicoxydans]
          Length = 148

 Score =  172 bits (435), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 110/150 (73%), Gaps = 5/150 (3%)

Query: 1   MLFAKFIHVLGLTVWVGGMFFAHMALRPALAV-LHPEQRLSLMAAVLGNFFIWVWVAIAL 59
           M+ AKF+H+LG TVWVGGMFFAH ALRP  AV L P QRL+L+A +   FF WVW+++AL
Sbjct: 1   MIIAKFLHILGFTVWVGGMFFAHNALRPVAAVTLEPPQRLTLLAGIFTKFFTWVWISVAL 60

Query: 60  VLGSGLHMMGVMSAGAAMLPPYVHAMTGIGVVMMLIFAHIFFAPFRRLKLASAQQDWDRA 119
           + GSGL+MM ++       P Y+  M  +GV+M LIFAHIFFAP+RRLK A A QDW   
Sbjct: 61  IFGSGLYMMALIGKP----PVYITLMFVLGVIMALIFAHIFFAPYRRLKRAVAAQDWKAG 116

Query: 120 SRALRQVRLLVGINLGLGLLTIAIGALGPL 149
             A+ Q+R LVGINL LGLLTI IG+LGPL
Sbjct: 117 GAAMGQIRKLVGINLILGLLTIVIGSLGPL 146


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.334    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 246,473
Number of extensions: 9251
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 77
Effective length of database: 756,517
Effective search space: 58251809
Effective search space used: 58251809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 124 (52.4 bits)