BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2714.p
         (289 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096057|ref|YP_001101132.1| hypothetical protein HEAR2897 [...   238   2e-64

>gi|134096057|ref|YP_001101132.1| hypothetical protein HEAR2897
           [Herminiimonas arsenicoxydans]
          Length = 283

 Score =  238 bits (608), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/288 (44%), Positives = 167/288 (57%), Gaps = 15/288 (5%)

Query: 9   LSAIYFYPIKSCGGLSLARAEIGPLGLA----LDRHWMVVDRQGQFLSQRSHPRMACITP 64
           L+ +  YPIKSC G+SL  A + P GL      DR WM+VD  GQ L+QR  PRMA I P
Sbjct: 4   LTELNLYPIKSCAGISLREATLTPAGLMSQHIYDREWMIVDVNGQALTQREFPRMALIEP 63

Query: 65  AFEEDALVLRAPGM---EALRLAAAGQDGATLAVQVWNSPLEALDQGEQARIWLSDYLHD 121
             + D + LR+PGM   E L       D   + V+VW+  ++A D  E   +W S+ L  
Sbjct: 64  RIKADTMELRSPGMLRFEVLLDLPDPADEKIIRVKVWDDEVDAYDCDETTALWFSNALGT 123

Query: 122 AVRLVRFNPAIMRACSTRWTGDYRASTQFSDGYPLLVIGQSSLDDLNARLAAKGAPAQGM 181
           A RLVRF+P   R+ +  WT        FSDG+P+LVIG  SL DLN +L A+G  A  M
Sbjct: 124 ACRLVRFHPNAQRSANKEWTDGRDVPALFSDGFPMLVIGTGSLADLNEKLVAQGRSALPM 183

Query: 182 ERFRPNLVISGLEAYEEDYIDTVRIGAGGRAVQLKLVKPCARCPIPGIDQRTGLRDAQWP 241
            RFRP++V S +  +EED+    ++G       LK VKPC RCPIP IDQ TG    +  
Sbjct: 184 NRFRPSMVFSDIAPFEEDFARQYKLGEAS----LKPVKPCPRCPIPSIDQATG----EIG 235

Query: 242 DEPLATLSTYRANPRVDGGLTFGQNAIVIGGEGGVIEVGQACEWELNF 289
            +PL  L TYR +P+VD  +TFG N I++ G G V+ VGQ  + EL+F
Sbjct: 236 PDPLDILRTYRVDPKVDDSITFGMNTILLNGAGQVVRVGQHVDMELDF 283


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 550,645
Number of extensions: 22251
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 208
Effective length of database: 733,452
Effective search space: 152558016
Effective search space used: 152558016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)