BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2712.p
         (308 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094554|ref|YP_001099629.1| glucose-1-phosphate uridylyltra...   402   e-113
gi|134093973|ref|YP_001099048.1| putative mannose-1-phosphate gu...    57   1e-09

>gi|134094554|ref|YP_001099629.1| glucose-1-phosphate
           uridylyltransferase [Herminiimonas arsenicoxydans]
          Length = 291

 Score =  402 bits (1032), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/260 (72%), Positives = 221/260 (85%)

Query: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60
           MLPIVDKPLIQYAVEEAV AGITEMIFITGRNKRAIEDHFD AYELE ELEAAGK  LLE
Sbjct: 29  MLPIVDKPLIQYAVEEAVAAGITEMIFITGRNKRAIEDHFDTAYELERELEAAGKTALLE 88

Query: 61  TIRNVIPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDAAPGHKNVMAQ 120
            ++NVIPKH+NC+Y+RQ+ PLGLGHAVL A+P+VG+EPFAVLLADDFMD   G   V+AQ
Sbjct: 89  FVQNVIPKHVNCIYIRQSAPLGLGHAVLCARPVVGNEPFAVLLADDFMDTPAGTAPVLAQ 148

Query: 121 MTALYEREGKSLLAVQDVPRPETRQYGIVSGSPYGERTELLSGIVEKPSPEEAPSTLAVV 180
           M  ++EREG S+LAVQDVPR ETRQYGIVS +PY +R E +  IVEKP PE+APSTLAVV
Sbjct: 149 MVEIFEREGSSILAVQDVPRAETRQYGIVSATPYQDRLEQVDAIVEKPQPEDAPSTLAVV 208

Query: 181 GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA 240
           GRY+L+  IF+ LEN+  GAGGEIQLTD I+AL++ +++LAYRYEGQR+DCGSKLGYLKA
Sbjct: 209 GRYILSGRIFDYLENVSQGAGGEIQLTDGIAALMRDQKVLAYRYEGQRYDCGSKLGYLKA 268

Query: 241 AVAMGFKHKEVGSGFAQFLQ 260
            V MG KH E G+ F ++L+
Sbjct: 269 MVDMGRKHPETGAAFTEYLK 288


>gi|134093973|ref|YP_001099048.1| putative mannose-1-phosphate
           guanyltransferase [Herminiimonas arsenicoxydans]
          Length = 391

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 29/198 (14%)

Query: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60
           M+PI+ KP+++Y VE  V+ GITE++       + IED+F +     +++  + +  + +
Sbjct: 25  MIPILGKPVMEYLVEHLVKYGITEIMVNVSYLHQKIEDYFGEGQRFGAQIGYSFEGYMTD 84

Query: 61  TIRNVIPKHINCVYVRQAEPLGLGHAVLLAKPLVG--DEPFAVLLADDFMDAAPGHKNVM 118
               V+PK           P+G    +   +   G  DE   V+  D  +D        +
Sbjct: 85  D-GEVMPK-----------PIGSAGGLKKIQEFGGFFDETTLVICGDALID--------L 124

Query: 119 AQMTALYEREGKSLLA---VQDVPRPETRQYGIVSGSPYGERTELLSGIVEKPSPEEAPS 175
              +AL+E   K  L     ++V   +T  YG+V      E   +LS   EKP PEEA S
Sbjct: 125 DIKSALFEHRQKGALVSIITKEVAPEKTVDYGMVVTD---EEGRVLS-FQEKPKPEEALS 180

Query: 176 TLAVVGRYVLTPAIFERL 193
            LA  G Y+  P + E +
Sbjct: 181 NLASTGIYIFEPEVLELI 198


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 605,289
Number of extensions: 25597
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 227
Effective length of database: 733,452
Effective search space: 166493604
Effective search space used: 166493604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)