BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2709.p
         (549 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094402|ref|YP_001099477.1| phosphoglucosamine mutase [Herm...    73   4e-14

>gi|134094402|ref|YP_001099477.1| phosphoglucosamine mutase
           [Herminiimonas arsenicoxydans]
          Length = 448

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 173/411 (42%), Gaps = 53/411 (12%)

Query: 40  RVAFGTSGHRGNANAHSFNEWHVLAITQAI------CDYRKQQGFKGPLFLGIDTHALSE 93
           R  FGT G RG           V+ +  A        +  K  G +  + +G DT  +S 
Sbjct: 3   RKYFGTDGVRGKVGVSPITPDFVMRLGYAAGSVLTKFETTKTPGSRPTVLIGKDTR-ISG 61

Query: 94  PAWHSALEV-LAANEVLTMLANGSPYVPTPAVSHAILTHNRVHRDKLADGIVVTPSHNPP 152
               +ALE   +A  V  MLA     VPTPAV++  LT       +L+ G+V++ SHNP 
Sbjct: 62  YMLEAALEAGFSAAGVDVMLAG---PVPTPAVAY--LTRAL----RLSAGVVISASHNPY 112

Query: 153 DNGGFKYNMPNGGP----SDSDVTGWIEQRANAYLEQKLAGVRRVTFEQALKADTTRRYD 208
           D+ G K+   +G      ++ ++   ++   +    +KL  V+R+            R  
Sbjct: 113 DDNGIKFFSASGNKLADATELEIEAALDVPMSCVASEKLGRVKRL---------DDARGR 163

Query: 209 YLDNYVGDLPNIIDLAAIAGANVKIGVDPLGGAGLHYWSAIAERYKLNLEVVNTDVDATF 268
           Y++      PN +DL        KI VD   GA  H    +   ++L  EVV        
Sbjct: 164 YIEFCKSTFPNELDL-----RGTKIVVDCAHGAAYHIAPDVF--HELGAEVVAIGNQ--- 213

Query: 269 RFVPQDWDGQIRMDPSSPYAMSELIAFKDRFDVAMACDTDHDRHGIVAKSSGLLPANDYL 328
              P  ++   ++  ++P A+ E +   ++ D+ +A D D DR  IV  +SG +   D +
Sbjct: 214 ---PSGFNINDKVGATAPAALVEAVR-ANQADIGIALDGDADRL-IVVDASGRIFTGDEM 268

Query: 329 SVAVYYLFRHRPSWRADAAVGKTLVSSQMINRVADHLGRKLLEMPVGFKWFVDGLYDGSL 388
              +Y + + R S +A A    TL+++  +      +G   +   VG ++ ++ L +   
Sbjct: 269 ---LYIMVKDRMSVQAVAGAVGTLMTNMALEVAFRKMGIGFVRANVGDRYVLEALQERGW 325

Query: 389 AFGCEESAGASFVRFDGQPWSTDKDGITAALLAAEMTARTGNDPGRLYQEL 439
             G E S    F+        T  DGI +AL       R+G    +L  ++
Sbjct: 326 LLGGEGSGHMLFL-----DKHTTGDGIISALQILSALKRSGKTLAQLTADI 371


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,113,559
Number of extensions: 48802
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 463
Effective length of database: 716,977
Effective search space: 331960351
Effective search space used: 331960351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)