BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2696.p
         (258 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095574|ref|YP_001100649.1| uroporphyrin-III C-methyltransf...    87   1e-18
gi|134093708|ref|YP_001098783.1| uroporphyrin-III C-methyltransf...    78   4e-16

>gi|134095574|ref|YP_001100649.1| uroporphyrin-III
           C-methyltransferase [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 86.7 bits (213), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 120/238 (50%), Gaps = 22/238 (9%)

Query: 2   KVYFVGAGPGAADLITLRGARLLGQVRMVLYAGSLVPTALLEHCHAEAEIID-------- 53
           KVY +GAGPGA DLIT+RGAR+L Q  +VL+  +LV   +L  C  +AE I         
Sbjct: 10  KVYLIGAGPGAIDLITVRGARILAQADVVLH-DALVTPEMLTLC-PQAEKISVGKRSGQR 67

Query: 54  -TAALDLEQQQACYVRAYEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSS 112
            TA + + Q     +   E+   +VRL  GDP ++G   E+++ L+  GIA E+VPG+++
Sbjct: 68  STAQIAINQ---LLIECAEKYQLIVRLKGGDPMLFGRADEELQALETHGIAVEIVPGITT 124

Query: 113 FTAAAAAVSAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKK 172
             AAAAA    LTK  V++S+     S  A   P+  ++        T+  ++ G     
Sbjct: 125 AFAAAAATQQPLTKRGVARSIAFF-TSSTAPNQPDQLTLPDC----DTLIQYMGGREAII 179

Query: 173 IVTDLLLH-YPPETPVTLVYRATWPEQRVYQGQLDKVLEENKRGEWNLTTMMLVGAAL 229
               LL     P  PV +V   +   QR+ +  L ++  E   GE     ++++G AL
Sbjct: 180 TAQKLLEQGRSPRLPVVVVENCSLESQRIMRMTLHEL--EQGLGECQGPVLVMIGEAL 235


>gi|134093708|ref|YP_001098783.1| uroporphyrin-III
           C-methyltransferase [Herminiimonas arsenicoxydans]
          Length = 266

 Score = 78.2 bits (191), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 14/217 (6%)

Query: 2   KVYFVGAGPGAADLITLRGARLLGQVRMVLYAGSLVPTALLEHCHAEAEIIDTAALDLEQ 61
           KV+ VGAGPG  DL+T++  + + +  ++L    LV   +L++  A A I+        +
Sbjct: 10  KVFLVGAGPGDPDLLTIKAVKAIARADVILID-DLVNPEVLQYAQAIARIVSVGKRGGCK 68

Query: 62  Q------QACYVRAYEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFTA 115
           Q      +   +   + G  VVRL  GDP I+G   E+   L A G+  EV+ G+SS  A
Sbjct: 69  QTPQEFIERLMLFEAQAGQCVVRLKGGDPFIFGRGGEERDHLQAEGVDVEVINGISSGLA 128

Query: 116 AAAAVSAELTKPEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKKIVT 175
           A A++   LT  + SQ VI   ++G       +    +LA    T+ I++      +I  
Sbjct: 129 APASIGVPLTHRDWSQGVIF--ITGHGKNAESNPDWYTLAKLNLTLVIYMGVARCTEIQA 186

Query: 176 DLLL-HYPPETPVTLVYRATWPEQRVYQGQLDKVLEE 211
            LL       TPV ++  AT   QR    QL  +L E
Sbjct: 187 ALLEGGKAGRTPVAVIQSATGVAQR----QLITILSE 219


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 452,117
Number of extensions: 17061
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 178
Effective length of database: 736,747
Effective search space: 131140966
Effective search space used: 131140966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)