BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2692.p
         (200 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094199|ref|YP_001099274.1| cob(I)alamin and cobinamide ATP...   196   9e-52

>gi|134094199|ref|YP_001099274.1| cob(I)alamin and cobinamide
           ATP-dependent adenolsyltransferase [Herminiimonas
           arsenicoxydans]
          Length = 211

 Score =  196 bits (497), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 132/196 (67%), Gaps = 2/196 (1%)

Query: 6   QSHKRMTQRHKEGFEKKKAAAQLEKGLLIVNTGTGKGKSSAAFGMGMRILGHGMKLGVVQ 65
           + H     R KE  +KK  AA+   G+L++  G GKGKSS+AFGM  R LGHGMK+GVVQ
Sbjct: 17  ERHNARMARKKEVVDKKIDAAKRNAGVLVITCGNGKGKSSSAFGMAARALGHGMKVGVVQ 76

Query: 66  FIKGALYSAERDFLGSHAN-CDFHVVGEGYTWDTQDRAADMRTAARGWAEAVRMIGDPSY 124
           FIKGA+ + E +F     +   FHV+GEGYTW+TQ+R  D+  A   W  A  ++ DP+ 
Sbjct: 77  FIKGAIATGEENFFRRFPDEISFHVMGEGYTWETQNRERDVEKAEIAWQRAKELLSDPAI 136

Query: 125 DMVILDELNIVLKYQYLELEEVLRTFAARREMLHIVVTGRHAPEALIEQADLVSEMRPLK 184
            MV+LDELNI LKY+YL+++ V+    AR  M H++VTGR AP  LI  A+ V+EM+P+K
Sbjct: 137 GMVVLDELNIALKYKYLDVQRVIADLQARPTMQHVIVTGRGAPPELIAVANTVTEMQPVK 196

Query: 185 HPYKEQGVKAQKGVEF 200
           H + + G+ AQ+GVE+
Sbjct: 197 HAFAD-GIAAQQGVEW 211


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 383,175
Number of extensions: 15332
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 123
Effective length of database: 746,632
Effective search space: 91835736
Effective search space used: 91835736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)