BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2690.p
         (223 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093697|ref|YP_001098772.1| putative nitroreductase [Hermin...   275   1e-75

>gi|134093697|ref|YP_001098772.1| putative nitroreductase
           [Herminiimonas arsenicoxydans]
          Length = 219

 Score =  275 bits (703), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 125/216 (57%), Positives = 164/216 (75%)

Query: 7   HRYPQEQIEALYRVIRERRDMRHFLPDPVDPALLERLLQAAHDGPSVGFMQPWRFIRIAS 66
           +++   +IEA+Y V+R RRDMRHF+P  ++   LER +QAAH GPSVG MQPWRFIRI+ 
Sbjct: 4   NKFSTPEIEAIYDVMRARRDMRHFVPGELEDGQLERFIQAAHMGPSVGLMQPWRFIRISD 63

Query: 67  RALRQQIHALVEQERIATAQALGQREDEFMRLKVEGILECGELLVAALMDRREAYVFGRR 126
             LR+ I   VEQERIATA ALG+R  EFMR+KVEGIL C E+LV  L+D+RE +VFGRR
Sbjct: 64  TGLRRSIQEHVEQERIATADALGERSSEFMRIKVEGILSCAEVLVVGLIDQRERFVFGRR 123

Query: 127 TLPQMDLASLACALQNMWLAARAEGLGMGWVSLFEPQALSHLLHLPSGAEPVAVLCLGHV 186
           T+P+MDLAS +CA+QNMWLAARAEG+GMGWVSLF+P  L  +  +P G++P+A+LCLG V
Sbjct: 124 TMPEMDLASASCAIQNMWLAARAEGIGMGWVSLFDPARLREICQMPDGSQPIAILCLGQV 183

Query: 187 PAFYDKPMLEQQQWAQRQRLQDLVFQDRWPAQGETP 222
             FY  PMLE + W +R+ L ++ +++ W A+   P
Sbjct: 184 KGFYPAPMLEIEAWDKRKALGEIYYENVWAAEKSLP 219


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 425,473
Number of extensions: 16766
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 145
Effective length of database: 743,337
Effective search space: 107783865
Effective search space used: 107783865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)