BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2689.p
         (203 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094201|ref|YP_001099276.1| bifunctional cobinamide kinase/...   224   3e-60

>gi|134094201|ref|YP_001099276.1| bifunctional cobinamide
           kinase/cobinamide phosphate guanylyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 182

 Score =  224 bits (570), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 142/191 (74%), Gaps = 11/191 (5%)

Query: 10  RSLVFGGARSGKSAHAEQLALAALQAGASEIVYIATASAHASRSDTEMQARIAHHQQRRI 69
           R+LV GGARSGKSAHAE LA AA       +VYIATA A     D EMQARIAHH+ RR 
Sbjct: 3   RTLVIGGARSGKSAHAEALATAA----GKPVVYIATAQA----GDAEMQARIAHHRARR- 53

Query: 70  ALGGQWRTVEEALALGDALRAHSRPDNVVLVDCLTVWLANLLFADGLEFPEVGPIEAPPA 129
                W TVEE L LG A+  HS PDN+V+VDCLTVWL+NLLFA+  +FPE+G I+AP  
Sbjct: 54  --DSHWVTVEEVLTLGAAIEKHSTPDNLVMVDCLTVWLSNLLFAEKNQFPEIGAIDAPAC 111

Query: 130 FTLQRVSFLRALQEAAGTVILVSNEVGMGIVPQGAISRWFVDEAGRLNQAVAALCERVQW 189
           FT QR + L+AL +A G VILVSNEVG GIVPQGA+SRWFVDEAGRLNQAVAA CER   
Sbjct: 112 FTEQRAALLQALMQARGDVILVSNEVGQGIVPQGAVSRWFVDEAGRLNQAVAAACERAVL 171

Query: 190 VAAGLPLTLKG 200
           V AGLPL LKG
Sbjct: 172 VVAGLPLALKG 182


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 357,512
Number of extensions: 12974
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 126
Effective length of database: 746,632
Effective search space: 94075632
Effective search space used: 94075632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)