BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2688.p
         (315 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094202|ref|YP_001099277.1| putative cobalamin biosynthesis...   381   e-107
gi|134093879|ref|YP_001098954.1| CobD/CbiB family protein [Hermi...    93   2e-20

>gi|134094202|ref|YP_001099277.1| putative cobalamin biosynthesis
           protein [Herminiimonas arsenicoxydans]
          Length = 304

 Score =  381 bits (979), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/305 (66%), Positives = 237/305 (77%), Gaps = 4/305 (1%)

Query: 14  MALGMALDLLLGEARRWHPLVGFGHLAQRIEALLNARPGLRLRGVLAWSLAVLPAVLLTI 73
           M LG+ LD+ LGEA RWHPLVGFG+LA RIE  LN      +RG +AW L VLP VL+  
Sbjct: 1   MMLGVLLDMRLGEATRWHPLVGFGNLAIRIEKKLNTGGSRIVRGAVAWMLIVLPLVLVAW 60

Query: 74  WLLSWLPWW---LSALLHATLLYFCIGLRSLREHTLPIAQALATGELEQARRLTSYIVSR 130
            L  WL  +   L+  +HA LLYF +GLRSLR+HTLPIA AL  G+L QAR LT+ IVSR
Sbjct: 61  LLTFWLAQFDLLLAFGVHALLLYFGLGLRSLRDHTLPIAHALMDGDLSQARLLTARIVSR 120

Query: 131 DTRQSNEQELAKAGVESLLENGNDAVFGTLFWFLVAGGPGALLFRLANTLDAMWGYRTER 190
           DT Q+ E +LAKAGVESLLENGNDAVFGTLFWF++AGGPG +LFR ANTLDAMWGYRT+R
Sbjct: 121 DTTQAQEADLAKAGVESLLENGNDAVFGTLFWFVLAGGPGVVLFRFANTLDAMWGYRTQR 180

Query: 191 FLQFGWAAARIDDVLNWIPARLTALSYAWLGQRQLAMRCWQQQAPAWSSPNAGPVMAAGA 250
           F +FG  AARIDDVLN+IPARLTALSYA LG  + A +CW+ QAPAWSSPNAGPVM+AGA
Sbjct: 181 FNEFGRVAARIDDVLNFIPARLTALSYAVLGNAKQAWQCWRVQAPAWSSPNAGPVMSAGA 240

Query: 251 GALGLALGGPAIYDGELEQRPPLGLGQPPQGPDIVRAWRLVAMSAALWLAVVGAVAVLCL 310
           GALG++LGG AIYDGE+EQRPPLG+G    G DI RAWRLV ++  LWLA++   AV+  
Sbjct: 241 GALGISLGGAAIYDGEVEQRPPLGIGPAAAGKDIARAWRLVVLTTVLWLALICIAAVIA- 299

Query: 311 GGSHA 315
           G  HA
Sbjct: 300 GVVHA 304


>gi|134093879|ref|YP_001098954.1| CobD/CbiB family protein
           [Herminiimonas arsenicoxydans]
          Length = 318

 Score = 93.2 bits (230), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 9/226 (3%)

Query: 39  LAQRIEALLNARPGLRLRGVLAWSLAVLPAVLLTIWLLSWLPWWL----SALLHATLLYF 94
           LA+++E   NA  G    G +AW L ++ A ++ + LL W+   +    + +++  ++Y 
Sbjct: 31  LAEKLEKSFNA--GQVQHGRIAWFL-MIAAFIVPVALLYWISLKIGPLAALVVNVAVVYV 87

Query: 95  CIGLRSLREHTLPIAQALATGELEQARRLTSYIVSRDTRQSNEQELAKAGVESLLENGND 154
            +G R        I  AL  G+   AR L +    RDT   +  E+A+  VE  L   + 
Sbjct: 88  TLGFRHYSHFFTSIQLALNNGDEATARSLLAEWTKRDTADMDVSEVARIAVEKALVTTHR 147

Query: 155 AVFGTLFWFLVAGGP-GALLFRLANTLDAMWGY-RTERFLQFGWAAARIDDVLNWIPARL 212
            VFG  FW L   GP GA+++R+A  L   W   +     +FG  AA+    ++WIP RL
Sbjct: 148 NVFGVFFWILTPLGPVGAIMYRVAEYLARAWNEPKAAEREEFGRFAAQAFYWIDWIPVRL 207

Query: 213 TALSYAWLGQRQLAMRCWQQQAPAWSSPNAGPVMAAGAGALGLALG 258
           TA ++A +G  + A+  W+  A  W     G +++AG GA+G+ LG
Sbjct: 208 TAAAFAVVGNFEDAIYAWRNFAGRWQDEAVGIILSAGGGAMGIRLG 253


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 477,064
Number of extensions: 16795
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 233
Effective length of database: 730,157
Effective search space: 170126581
Effective search space used: 170126581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)