BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2681.p (503 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 172 3e-44 gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 169 4e-43 gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 159 2e-40 gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 137 1e-33 gi|134095533|ref|YP_001100608.1| putative RND efflux system, out... 137 1e-33 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 172 bits (437), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 130/464 (28%), Positives = 232/464 (50%), Gaps = 13/464 (2%) Query: 20 TLLAGCAVGPDYHRPTVDMPIAYKEAAGWKQAAPSDDQPRSAWWQAFGDEQLDALMRQVE 79 ++L+ C++ P Y RP D P+A A A + W F D++L AL+ Sbjct: 13 SVLSACSMAPKYTRP--DAPVAADYPAASAAADKQQRAHETGWRNFFPDQRLQALIGAAL 70 Query: 80 ISNQNVAQYAAQYAQAQAVVRQADASFSPTVTATASGTRSGNASGTTSSKTTTSTTSTTS 139 +N+++ A + +A+A A P + T +G+R+ T +S + T S +S Sbjct: 71 ANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRAR----TPASISPTGIDSVSS 126 Query: 140 TTRSGVSNEVSASGSLSWELDLWGKLRRTREEDVASAQASQADLANALLSAQSSLAQDYF 199 + G+S S+ELD +G++ + +AS A++ A +S + +A+ Y Sbjct: 127 AYQVGLSLA-------SFELDFFGRVHSLNDAALASYLATEEAQRAAHISLVAEVAKAYL 179 Query: 200 SLRILDERIALYEKTVAAYTRYASIVENQYTEAQSSRADVAQARNQLESAKASMHDLAWQ 259 + R E++AL + T+ + + + ++ SS D+ Q L+SA+ + LA Q Sbjct: 180 AERAFAEQLALAQSTLKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSARVAQVTLARQ 239 Query: 260 RAQYEHAIAILLGKAPAAFSLPAVIGGPMQVPVTPVGLASTLLERRPDIASSERSMAKAN 319 RAQ +A+ +L+G+ F + V P GL S LL +RPDI S+E+S+ AN Sbjct: 240 RAQALNALTLLVGQPLTGFPEAQPLSAQNIVTDIPAGLPSDLLTQRPDIRSAEQSLLAAN 299 Query: 320 AAIGVAIAAYYPDLTLSASAGFQNSSASKLFTAPYRFWSLGPSFSQTLFDGGSIKAQVEQ 379 A IG A AA++P ++L+A G +S+ S LF + R W+ P +FD G A + Sbjct: 300 ANIGAARAAFFPRISLTAGIGTASSTLSNLFDSGTRAWTFAPQLVLPIFDAGRNSANLTL 359 Query: 380 ARASYDAAVASYRQTVLTALGQVEDYLAKMRIMESEMQAQQAATDAAIVSARVTRDQYEA 439 + + A+A+Y +++ +A +V D L ++E ++ AQ+ +A ++ +++ Sbjct: 360 SEVRKNIAIANYEKSIQSAFREVSDALVARDLLEEQIDAQRRVQEAQAERLKLADQRFQN 419 Query: 440 GKINYLDVATTEATSLSAQQSLWELKGTQLTTSVQLIVALGGGW 483 G + LDV + SA+Q L + + +LT ++ L +LGGG Sbjct: 420 GIASSLDVLDAQRELFSAEQDLVQARLLRLTNAIDLYRSLGGGL 463 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 169 bits (427), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 147/474 (31%), Positives = 240/474 (50%), Gaps = 27/474 (5%) Query: 13 MAMACLLTLLAGCAVGPDYHRPTVDMPIAYKEAAGWKQAAPSDDQPRSAWWQAFGDEQLD 72 +A+A L + +GCA D +P V++P A W + AP+ + + WW+ FG +L Sbjct: 14 LAVAVLFAV-SGCAHNIDASKPNVEIP------ATWAEVAPAGIELQRDWWRGFGSNELS 66 Query: 73 ALMRQVEISNQNVAQYAAQYAQAQAVVRQADASFSPTVTATASGTRSGNAS-GTTSSKTT 131 AL+ Q + ++ A + QA+ A AS P +T +A GT +G G T S Sbjct: 67 ALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLTVSA-GTDTGQVKPGPTGSGWA 125 Query: 132 TSTTSTTSTTRSGVSNEVSASGSLSWELDLWGKLRRTREEDVASAQASQADLANALLSAQ 191 S ++ + S+++E+D+WG++ T AS AS+ DL L+ Sbjct: 126 RSESTGVAL-------------SVNYEVDVWGRVAATTRSANASLNASRYDLETVRLTLT 172 Query: 192 SSLAQDYFSLRILDERIALYEKTVAAYTRYASIVENQYTEAQSSRADVAQARNQLESAKA 251 + +A YF L ++ + ++ +A + SIVE +Y +S DV++ R+ + + +A Sbjct: 173 TGVANAYFQTLALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDVSRQRSTVLAQRA 232 Query: 252 SMHDLAWQRAQYEHAIAILLGKAPAAFSLPAVIGGPMQVPVTPVGLASTLLERRPDIASS 311 ++ L Q Q A+AILLG+ P A + A+ + +P GL STL+ RRPD+AS Sbjct: 233 TILPLQVQERQTVSALAILLGRQPQALQVAALSLDTLAIPEVSPGLPSTLITRRPDVASV 292 Query: 312 ERSMAKANAAIGVAIAAYYPDLTLSASAGFQNSSASKLFTAPYRFWSLG--PSFSQTLFD 369 E + +A + A AA P ++L+ SAG N+SA+ L T +S+G S QTLFD Sbjct: 293 EAQLLAGSANVAAARAALLPTISLTGSAG--NASAA-LLTLGNPAYSIGIAASIVQTLFD 349 Query: 370 GGSIKAQVEQARASYDAAVASYRQTVLTALGQVEDYLAKMRIMESEMQAQQAATDAAIVS 429 G S++ +VE ++ SYR+TV TAL +V+D L + QAQ A A + Sbjct: 350 GNSLRLRVETNESTRRQLAESYRRTVYTALKEVDDALGNATRNREQEQAQIAIKKEAERA 409 Query: 430 ARVTRDQYEAGKINYLDVATTEATSLSAQQSLWELKGTQLTTSVQLIVALGGGW 483 ++ +Y G + + + T +A L +L+ +LT + + ALGGGW Sbjct: 410 LALSELRYREGADDLNSLLDAQRTLFAADDKLTQLRLLRLTGTTDVFKALGGGW 463 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 159 bits (403), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 130/426 (30%), Positives = 202/426 (47%), Gaps = 21/426 (4%) Query: 62 WWQAFGDEQLDALMRQVEISNQNVAQYAAQYAQAQAVVRQADASFSPTVTATASGTRSGN 121 W F D +L L+ Q +N+++ + +A+A A P + A A R+ Sbjct: 66 WRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQAGSERAH- 124 Query: 122 ASGTTSSKTTTSTTSTTSTTRSGVSNEVSAS-GSLSWELDLWGKLRRTREEDVASAQASQ 180 + T + +S++ S G SWE+D WG++R R+ + + AS Sbjct: 125 -----------VPADLSLTGKPAMSSQYHVSLGLASWEIDFWGRVRSLRDAALENYLASD 173 Query: 181 ADLANALLSAQSSLAQDYFSLRILDERIALYEKTVAAYTRYASIVENQYTEAQSSRADVA 240 +S + +A Y +L LDERIAL T+A+ I + +SR ++ Sbjct: 174 EARRAVTISLVAQVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNLT 233 Query: 241 QARNQLESAKASMHDLAWQRAQYEHAIAILLGKAPAAFSLPA----VIGGPMQVPVTPVG 296 Q + L A+A L RA +A+ +L+G LPA + M +P+ P G Sbjct: 234 QVQTLLSQAQALGAQLEQARALQANALILLVG---VTLELPATSSRLDERQMLLPLQP-G 289 Query: 297 LASTLLERRPDIASSERSMAKANAAIGVAIAAYYPDLTLSASAGFQNSSASKLFTAPYRF 356 L S LL RRPDI ++E + A+A IG A AA++P + L+ S G ++ LF A R Sbjct: 290 LPSDLLIRRPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGSRA 349 Query: 357 WSLGPSFSQTLFDGGSIKAQVEQARASYDAAVASYRQTVLTALGQVEDYLAKMRIMESEM 416 W+ PS S LFD G + A A D AVA+Y +T+ A V D LA + + ++ Sbjct: 350 WTFAPSISLPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAARQWLAQQL 409 Query: 417 QAQQAATDAAIVSARVTRDQYEAGKINYLDVATTEATSLSAQQSLWELKGTQLTTSVQLI 476 QAA AR+++ +Y+ G YLDV + L A+Q L +++ L++ V L Sbjct: 410 LIAQAALTTQTERARLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRALLSSQVSLY 469 Query: 477 VALGGG 482 ALGGG Sbjct: 470 AALGGG 475 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 119/433 (27%), Positives = 205/433 (47%), Gaps = 38/433 (8%) Query: 62 WWQAFGDEQLDALMRQVEISNQNVAQYAAQYAQAQAVVRQADASFSPTVTATASGTRSGN 121 W F D +L+ L+ + +N+++ +A+A + +A P + + + RSG Sbjct: 68 WRDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALDGSVARNRSGG 127 Query: 122 ASGTTSSKTTTSTTSTTSTTRSGVSNEVSASGSLSWELDLWGKLRRTREEDVASAQASQA 181 + G + SA+ S S+ELDL+G++ + + A + Sbjct: 128 -----------------NVVNPG--DYYSAALSASFELDLFGRIHNLSQAALEQYFAQEE 168 Query: 182 DLANALLSAQSSLAQDY--FSLRILDERIA--LYEKTVAAYTRYASIVENQYTEAQSSRA 237 +A LS + +A Y F+ + +RIA ++ AY +V ++ S Sbjct: 169 GQRSAQLSLIAEIANTYLTFAADLESQRIAQATFDNQQIAY----DLVVKRHRAGAVSGL 224 Query: 238 DVAQARNQLESAKASMHDLAWQRAQYEHAIAILLGKA------PAAFSLPAVIGGPMQVP 291 D++QA+ +E+A+A + A A +A+ +L+G P F L P+ Sbjct: 225 DLSQAQTTIETARADVARYAGLVATDRNALTLLVGAPVEDSLLPQGFDLKVSGIAPL--- 281 Query: 292 VTPVGLASTLLERRPDIASSERSMAKANAAIGVAIAAYYPDLTLSASAGFQNSSASKLFT 351 P L S +L RRPD+ +E + ANA IG A AA++P ++L+ S G ++ S LF Sbjct: 282 --PAQLPSQVLLRRPDVRQTEHVLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFD 339 Query: 352 APYRFWSLGPSFSQTLFDGGSIKAQVEQARASYDAAVASYRQTVLTALGQVEDYLAKMRI 411 + +FWS P S +F GG+++A + A A D A+A Y + + + +V D LA Sbjct: 340 SGTKFWSFVPQISLPIFHGGALRANLGVATADRDIALARYEKAIQSGFREVADALALTST 399 Query: 412 MESEMQAQQAATDAAIVSARVTRDQYEAGKINYLDVATTEATSLSAQQSLWELKGTQLTT 471 + QAQQA DAA + +++ +Y+ G+ ++L + + T +AQQSL + + Sbjct: 400 LAQRRQAQQALLDAASRAYDLSKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGN 459 Query: 472 SVQLIVALGGGWH 484 V L LGGGW Sbjct: 460 RVTLYKVLGGGWE 472 >gi|134095533|ref|YP_001100608.1| putative RND efflux system, outer membrane lipoprotein, NodT [Herminiimonas arsenicoxydans] Length = 499 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 134/492 (27%), Positives = 224/492 (45%), Gaps = 39/492 (7%) Query: 11 RPMAMACLLTLLAGCAVGPDYHR---PT------VDMPIAYKEAAGWKQAAPSDDQPRSA 61 R + + L+ L++ C VGPDY R PT D + + G Q +D + Sbjct: 9 RYLIVVTLIQLISACTVGPDYIRQPPPTETAYTKKDPIVTTADNNGNAQRFHTDAAISAD 68 Query: 62 WWQAFGDEQLDALMRQVEISNQNVAQYAAQYAQAQAVVRQADASFSPTVTATASGTRSGN 121 WW F L + + +N ++ A ++Q ++ F P + + S TR Sbjct: 69 WWNLFHSADLGEAVDRSLRNNASLQAAQASLKESQHNLQAGYGVFFPQIGGSFSATRQ-- 126 Query: 122 ASGTTSSKTTTSTTSTTSTTRSGVSNEVSASGSLSWELDLWGKLRRTREEDVASAQASQA 181 S S + G+ N + ++S+ LD++G RR E A +QA Sbjct: 127 ---------LPSAFRFGSASPVGIFNLFTLGAAISYTLDIFGGERRMVE-----ALGAQA 172 Query: 182 DLANAL-LSAQSSLAQDYFSLRILDERI-ALYEKTVAAYTRY---ASIVENQYTEAQSSR 236 D + L+ +L+ + + I A YE T R ++ ENQ + Sbjct: 173 DYQKYVALATYLTLSGNVVNTAIARAAYHAQYEATQQLILRQQEQLAVAENQAAHGIAPY 232 Query: 237 ADVAQARNQLESAKASMHDLAWQRAQYEHAIAILLGKA-----PAAFSLPAVIGGPMQVP 291 A V R+ L S++A++ +A +R Q +H +A L G ++F L A + P +P Sbjct: 233 ATVLSLRSLLASSQAALAVVAQKRDQADHLLANLQGTTASGTYTSSFDL-AQLELPQDLP 291 Query: 292 VTPVGLASTLLERRPDIASSERSMAKANAAIGVAIAAYYPDLTLSASAGFQNSSASKLFT 351 +T L S L+ +RPD+ ++E + A+A +GVA AA +P +L A+ N+ L Sbjct: 292 LT---LPSELVRQRPDVLAAEAQLHVASAGVGVATAALFPSFSLGANYALGNTKLGNLSD 348 Query: 352 APYRFWSLGPSFSQTLFDGGSIKAQVEQARASYDAAVASYRQTVLTALGQVEDYLAKMRI 411 + +FWS+G +F GG+ + A+ +Y A+A+YRQTVL+A QV D L + Sbjct: 349 SSSKFWSVGSGVDVPIFQGGTAWHKRRAAQDAYQQALANYRQTVLSAFQQVADVLTAIEH 408 Query: 412 MESEMQAQQAATDAAIVSARVTRDQYEAGKINYLDVATTEATSLSAQQSLWELKGTQLTT 471 ++AQ + AA + ++ Y AG ++YLDV ++ + + G + Sbjct: 409 DAQAVKAQAESLGAAEQTLKLIEVNYRAGLVSYLDVLAANTQFYQSKIAYLQALGLRYQD 468 Query: 472 SVQLIVALGGGW 483 + L VALGGGW Sbjct: 469 TTALFVALGGGW 480 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.122 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 760,939 Number of extensions: 25201 Number of successful extensions: 116 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 8 Length of query: 503 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 417 Effective length of database: 716,977 Effective search space: 298979409 Effective search space used: 298979409 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)