BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2679.p (1140 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094676|ref|YP_001099751.1| putative two-component sensor k... 646 0.0 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 430 e-121 gi|134094133|ref|YP_001099208.1| putative response regulator rec... 182 7e-47 gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 130 3e-31 gi|134093857|ref|YP_001098932.1| putative two-component system s... 96 1e-20 >gi|134094676|ref|YP_001099751.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 499 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/487 (65%), Positives = 390/487 (80%), Gaps = 4/487 (0%) Query: 5 ATQRIVKVRRDYNTWVANETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEAISGA 64 A Q+I ++RRDYN WVANE+LEDYALRYTP FR+WSE+RL N A GA SFLALEAI GA Sbjct: 2 AQQKIFRIRRDYNRWVANESLEDYALRYTPRGFRKWSEWRLGNAAFGAASFLALEAIGGA 61 Query: 65 ITLSYGFTNAFWAIVCVVVLFFLTGLPISYYAARYGVDMDLLTRGAGFGYIGSTITSLIY 124 I L+YGF NA WAI+ V V+ FLTGLPISYYAARYG+DMDLLTRGAGFGY+GSTI+SLIY Sbjct: 62 IALNYGFANAVWAILTVAVITFLTGLPISYYAARYGIDMDLLTRGAGFGYMGSTISSLIY 121 Query: 125 ASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSLIIIPMVAYGITLINRLQMWTQPLW 184 ASFT IFFALEAAI+A A++++ PL YV+C L I+P+VA GITLI+RLQ+WTQPLW Sbjct: 122 ASFTIIFFALEAAILAVALQMWIAWPLWIWYVICPLFIVPLVARGITLISRLQLWTQPLW 181 Query: 185 LVLLVLPYVCVLYKEPEALSNLLSFAGRAEEGSSFNLTLFGAAATVAFSLIAQVGEQVDF 244 L+LL+ PYV + +K+PEA + F G + S+F+ +FG AATVAFSL+AQ+GEQVDF Sbjct: 182 LLLLITPYVAIFWKKPEAYTEFTQFVGAISKSSNFDPVMFGVAATVAFSLVAQIGEQVDF 241 Query: 245 LRFLPQKTSANRGRWWGALLLAGPGWILLGGAKMLGGTLLAFLAIQHEVPMARAVEPTQM 304 LRFLP+KT+ NR RWW A+++AG GWI+ GG KMLGG LA+L Q VP A A+EPT+M Sbjct: 242 LRFLPEKTAVNRRRWWTAVIVAGAGWIVPGGLKMLGGAFLAYLVFQTGVPAAHAMEPTRM 301 Query: 305 YLIGYQYVFGNPALALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGRVVWL 364 YL+G+ ++F +PA L +LFVVVSQ+KIN+TNAYAGSLAWSNFFARLTHSHPGRVVWL Sbjct: 302 YLLGFSHLFSDPAWVLAITLLFVVVSQVKINLTNAYAGSLAWSNFFARLTHSHPGRVVWL 361 Query: 365 VFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKPLRLSPAHIEFKRAH 424 VFN L+A+LLM LGVF ALE+VL LYS VA++W+G +VADLVINKPL LSP IEFKRAH Sbjct: 362 VFNCLLALLLMNLGVFAALENVLGLYSNVAVAWVGTLVADLVINKPLGLSPKGIEFKRAH 421 Query: 425 LYDVNPVGVGSMTIATLLSTLAMSGVLGKTVAAMAPFIALGTALVSAPLIAVATGSR--- 481 LYD+NPVG+G+M +A + A SGV+G VAA +PFI LG V +PL+A A + Sbjct: 422 LYDINPVGLGTMLLAAGVGITAFSGVMGPEVAAFSPFITLGMTFVISPLLAFAKTALNPR 481 Query: 482 -YYIARR 487 + IARR Sbjct: 482 IWRIARR 488 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 430 bits (1105), Expect = e-121, Method: Compositional matrix adjust. Identities = 249/561 (44%), Positives = 348/561 (62%), Gaps = 7/561 (1%) Query: 564 LIPARFTLKLNTRIGHYLAVFGLLAGGLAIVLWMLYFQQMADLSGLTLSAPDSLRGVFIK 623 L+P F+ ++ R+G+Y+ V L A L ++Y Q+++ ++ ++ + + G+FIK Sbjct: 4 LLPNAFSHLISRRVGNYMVVVLSLCAVGAAALGLVYVQEISAIA--SVESRILIDGIFIK 61 Query: 624 LFCLLLVVVGVGAWWLVLTNESRAVAQEESERQTNLLLQEIEAHKQTDAELQRAKEAAES 683 + +L ++V V +WW+VL +E R +AQ++ RQ LL QEIEAH++TD LQ AKEAAE Sbjct: 62 IAAVLSIIVAVSSWWVVLGSEGRHLAQDDLNRQNELLTQEIEAHQRTDVALQSAKEAAEF 121 Query: 684 ANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEAIAIIRRSGEHLLSLIDG 743 AN AK+R+VAG+SHELR+PLNSILGY+QIL + + A + AI I RSGEHLL L+D Sbjct: 122 ANQAKTRYVAGISHELRSPLNSILGYSQILLKNEHLAAAPRTAIQTIHRSGEHLLGLVDE 181 Query: 744 LLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQFRFEKTGRLPQIVHADQK 803 LLD+A+IEA +MRL + L AFLE ++ M PQAE KGL+ G++ + V AD K Sbjct: 182 LLDLARIEADRMRLEPAPILLSAFLEDLLSMVRPQAEAKGLKLLCTYNGKISRYVLADGK 241 Query: 804 RLRQILINLLGNAVKFTDRGGVTLKLRYAREIAYFDVIDTGIGIAEDDLERIFLPFERSS 863 RLRQI INLL NAV+FTD G VTL + + FDV+DTGIGIA D +RIF PFER + Sbjct: 242 RLRQIFINLLTNAVRFTDDGSVTLHVECSPASVRFDVVDTGIGIAVQDRQRIFQPFERGA 301 Query: 864 AANLREDIGTGLGLAISRMLVHIMGGELGVQSQVGQGSSFHLKIYLPEVHVPRPRIPLED 923 A LR + G GLGLAI+ L+ +M G L + S GQGS+F +++ L E+ +P D Sbjct: 302 AGRLRGEPGAGLGLAITEKLILLMNGSLNLVSMQGQGSTFIVRLPLTEI-TAFESLPQRD 360 Query: 924 QMSGYLGRSRHILVVDDQASQRRLLQDMLLPLGFTVSQADSGLACMERLAHEVPDLVLLD 983 + G+ G +R +LVVDDQ QR +L ML+PLGF V +A SG C++ L PD +LLD Sbjct: 361 VI-GHAGPARTLLVVDDQPVQRHMLTGMLIPLGFNVREAASGNECLDLLQDFAPDAILLD 419 Query: 984 IAMPQMDGWTVARAIRARGLTQLPILLVSANAFENLHERNEPPLVNDFVVKPVSYNELLG 1043 I M MDGW AR +RA G +PI+ +SA+ FEN E+ FV KPV +EL+ Sbjct: 420 IGMDGMDGWETARQVRAAGHAAVPIIFISADLFENDPEKLRLAGCQAFVGKPVLESELML 479 Query: 1044 KIRQHLQLDWVATPAAPAVVSQSLM---LVPTQDKLAALLELGHIGYAKEILRQLDALES 1100 ++ L L WV T A S ++ L Q + LL+L +G+ + LD L + Sbjct: 480 ALQGQLGLKWVYTGLAEQRPSAGILPEQLAFPQPVITQLLQLTRMGHVTGLRCALDRLAA 539 Query: 1101 GNPAYLPFTTELRLLVKQFRL 1121 +P+ R L+ +F L Sbjct: 540 ADPSLHTSCAVARALLDRFEL 560 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] Length = 560 Score = 182 bits (462), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 126/384 (32%), Positives = 211/384 (54%), Gaps = 12/384 (3%) Query: 673 ELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEAIAIIRR 732 +L AK AE+AN AKS F+A MSHE+RTP+N +LG Q+ A+ ++E + + Sbjct: 174 DLSLAKNEAEAANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAQAS-DVEQREYLETAQY 232 Query: 733 SGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQFRFEKTG 792 S E LL++++ +LD +K+E+G + + L ++ ++ + + + + L E Sbjct: 233 SAEALLTILNDILDFSKLESGHLEFEAVTFDLPKAVDSVIELMSARMQGAALSLNAECDA 292 Query: 793 RLPQIVHADQKRLRQILINLLGNAVKFTDRGGVTLKLR----YAREIA-YFDVIDTGIGI 847 LP+++ D RLRQ+L+NL+GNA+KFT++G VTLK+ +I F VID+GIGI Sbjct: 293 DLPRLLTGDVGRLRQVLLNLIGNALKFTEQGSVTLKIERLPASGTQIPLRFTVIDSGIGI 352 Query: 848 AEDDLERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELGVQSQVGQGSSFHLKI 907 ++ R+F F ++ + R GTGLGL+I + +V + G +GV+S G+GS F ++ Sbjct: 353 TAEEQTRLFQSFSQADHSISRRFGGTGLGLSICKKIVEMQRGCIGVESTPGEGSRFWFEL 412 Query: 908 YLPEVHVPRPRIPLEDQMSGYLGRSR--HILVVDDQASQRRLLQDMLLPLGFTVSQADSG 965 V P P + ++ L SR HIL+ +D ++++ +L G TV A +G Sbjct: 413 TF--VPAPEPGEKSDIIVAPALPASRTLHILLAEDNEINQKVVVALLKKSGHTVQIAQNG 470 Query: 966 LACMERLAHEVPDLVLLDIAMPQMDGWTVARAIRAR--GLTQLPILLVSANAFENLHERN 1023 + + V D++L+D+ MP+MDG RAIR LPI+ ++A + + Sbjct: 471 REAVLAVQQGVFDVILMDMHMPEMDGLAATRAIRGMPAPACSLPIVALTAAVTLSDIQTC 530 Query: 1024 EPPLVNDFVVKPVSYNELLGKIRQ 1047 +N F+ KP L G +++ Sbjct: 531 MDAGMNYFLAKPFRIERLNGILQE 554 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/380 (28%), Positives = 182/380 (47%), Gaps = 19/380 (5%) Query: 675 QRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEAIAIIRRSG 734 Q + AESAN + F++ ++HELR+PL I A +L T P + II R Sbjct: 93 QDMQAKAESANHRQEEFLSMLAHELRSPLAPIAMAADLLGKITTAHPMLPKLYGIISRQV 152 Query: 735 EHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQFRFEKTGRL 794 H+ L+D LLD +++ G + L L L ++ V P Q+ Q T L Sbjct: 153 GHMAHLVDDLLDASRVSTGNITLQKRSLLLSEIIDSAVETSQPFINQRNQQL----TITL 208 Query: 795 PQ---IVHADQKRLRQILINLLGNAVKFTD-RGGVTLKLRYAREIAYFDVIDTGIGIAED 850 P+ +++ D RL Q NL+ NA KFT G + + + ++ + D G+GIA D Sbjct: 209 PEDTVVINGDLVRLAQAFANLIINATKFTPVDGHIDISAQVLADVVKVSIKDNGMGIAPD 268 Query: 851 DLERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELGVQSQ-VGQGSSFHLKIYL 909 IF F + + R G G+GL++ R +V + GG + V S +G GS F + L Sbjct: 269 IQPFIFDLFRQGPHSLDRSQGGLGIGLSLVRTVVQMHGGTVSVYSAGLGCGSEFF--VVL 326 Query: 910 PEVHVPRPRIPLEDQMSGYLG--RSRHILVVDDQASQRRLLQDMLLPLGFTVSQADSGLA 967 P + + + S L IL+++D S +L ++L G T++ A G + Sbjct: 327 P---ISTELMTDDGSTSSSLDPVPGCRILLIEDNVSANEILSELLTMEGHTITSAFDGTS 383 Query: 968 CMERLAHEVPDLVLLDIAMPQMDGWTVARAIRARGLTQLPILLVSANAFENLHERNEPPL 1027 +E + + D++L DI +P +DG+ V + +R + +P L ++ + + R+ Sbjct: 384 GLEMAQNNIYDIILCDIGLPGIDGYEVVKRLRLNTVKAVP-LCIAISGYSQQENRSNAER 442 Query: 1028 V--NDFVVKPVSYNELLGKI 1045 V + ++VKPV+ L+ I Sbjct: 443 VGFDHYLVKPVAITTLVNLI 462 >gi|134093857|ref|YP_001098932.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 467 Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 8/223 (3%) Query: 689 SRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEAIAIIRRSGEHLLSLIDGLLDIA 748 S+F ++HE RTP+ S+LG +Q+ K+ + E L +ID +L +A Sbjct: 250 SQFSTDLAHEFRTPVTSLLGQSQVALGRPRSADEYKQLVISNMEELERLSRMIDSMLFLA 309 Query: 749 KIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQFRFEKTGRLPQIVHADQKRLRQI 808 ++E +M +A L ++ +++ F ++++GL + G IV AD + LR+ Sbjct: 310 RVEREQMSVARYPLLVQDEFDRLCNFFEDMSDERGLILSNQGDG----IVMADAQLLRRA 365 Query: 809 LINLLGNAVKFTDRGG-VTLKLRYAREIAYFDVIDTGIGIAEDDLERIFLPFERSSAANL 867 L NLL NA++ D+G + L+ R E V +TG I + + +F F R+ +A Sbjct: 366 LSNLLSNAIRHADKGSTIELRSRQEAEFVVLSVTNTGATIGPEHMPHLFDRFYRADSART 425 Query: 868 REDIGTGLGLAISRMLVHIMGGELGVQSQVGQGSSFHLKIYLP 910 TGLGL+I R ++ + G V S Q HL++Y P Sbjct: 426 DSSESTGLGLSIVRAIMTLHHGRATVTS---QDKITHLELYFP 465 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 2,039,464 Number of extensions: 83856 Number of successful extensions: 501 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 469 Number of HSP's successfully gapped: 32 Length of query: 1140 Length of database: 1,000,347 Length adjustment: 92 Effective length of query: 1048 Effective length of database: 697,207 Effective search space: 730672936 Effective search space used: 730672936 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 134 (56.2 bits)