BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2678.p
         (418 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [...    65   8e-12

>gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390
           [Herminiimonas arsenicoxydans]
          Length = 429

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 158/379 (41%), Gaps = 44/379 (11%)

Query: 14  RRKILMGLAAGAAAAA---LPGMASAQQYPTAKVNTTKLAITDTEVTVGQLHSATGTMAI 70
           RR +L  + AG A  A   L   A AQ  P               + +G +    G    
Sbjct: 10  RRSVLKAIGAGVAVGASGFLGVPAFAQNKP---------------IRIGIIAPRGGVAGT 54

Query: 71  SETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLENDRVAAVFGC 130
                ++       +INA GGI GRK++++ ++  S   T  ++ +KL+  ++V  V G 
Sbjct: 55  IGECGLRGVEWTTARINAAGGIGGRKVELVIQEETSPKDTI-DRFRKLVLQEKVDCVQGI 113

Query: 131 WTSASRKAVLPVFEKDNGLLYYPT-FYEGLEQS---------KNVFYTGQEATQQVLAGL 180
            +S    A+ P  E        PT F++G  Q          K VF +     + V+A L
Sbjct: 114 VSSGVSLALAPAAEDSR----MPTIFWDGTTQDGVKETMPKPKYVFRSTDNECEAVMASL 169

Query: 181 NWVAKEK-KAKTFFLVGSDYIWPRTSNKIARKHIENV-LKGSVVGEEYYPLGNTQFGSLI 238
             +   K K K    V  DY + R +    +  ++   ++  VV E++  +GN    S +
Sbjct: 170 LAIKHFKGKFKRIACVNPDYSYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLDLTSNV 229

Query: 239 NKIKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLG--IGGENVE 296
             +K  KPD+IF+ ++      F KQ   AG+T  T+ +L  +  +   +      E + 
Sbjct: 230 AALKAAKPDLIFSSLLFADLPVFMKQAHNAGLTEGTRFVLPAAGWQHTAMKKEFTPEGIV 289

Query: 297 GFFASMKYFQSLDNPNNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSFD- 355
               +M +     +   K+FV  +  K+            AY    ++KA VEKA +   
Sbjct: 290 WGHNTMYFDDPKASATQKEFVKWYADKY--KDYPHWEADRAYFSMMVYKAGVEKALAAKK 347

Query: 356 ----VDKVVAASPGIELKT 370
                +++ AA PG+++++
Sbjct: 348 SWPTPEEICAAIPGVQVES 366


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 725,857
Number of extensions: 29590
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 334
Effective length of database: 723,567
Effective search space: 241671378
Effective search space used: 241671378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)