BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2677.p (293 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC t... 80 2e-16 gi|134096410|ref|YP_001101485.1| high-affinity branched-chain am... 72 5e-14 gi|134095849|ref|YP_001100924.1| high-affinity branched-chain am... 69 3e-13 gi|134095639|ref|YP_001100714.1| high-affinity branched-chain am... 65 3e-12 >gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC transporter permease [Herminiimonas arsenicoxydans] Length = 293 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 132/281 (46%), Gaps = 12/281 (4%) Query: 11 CVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQPFYFFAAIVL 70 VL L+A GL +IFG +IN+A G +GAY ++ + P + F ++L Sbjct: 16 AVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKG---LPVHLFPFVLL 72 Query: 71 SFAVAYGVGYLTELLLISRLYKRPLD-TLLATWGLSLAMQQTFRSIFGAKEVSATLPDWL 129 + G+ + LI +Y RP LL T+ + L Q R +GA LP+ Sbjct: 73 GAGIVIGLIGIPLERLIRTIYNRPESFQLLLTFAVMLMFQDVLRFFWGAD--PQQLPNVS 130 Query: 130 MGSFKPTDA--IDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRVMSGAVGI 187 M +F A + +P + ++ + V L + L +++ G +RAT +NR S A+GI Sbjct: 131 M-TFGILSAFGVSMPTYNVMVIAVAVSLAIGMAYFLGKTKTGKILRATAENRETSAAMGI 189 Query: 188 NTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLIGTIAS 247 N +V F LG + + GA + G +V+ F VVV GG S+ G Sbjct: 190 NVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVVIGGLGSMKGAAVG 249 Query: 248 AFSIAQTQSTAEFFLTGSMAKVLTLSAVIV-ILMLRPQGLF 287 A + ++ + + A++L + A+++ +L+ +P GL+ Sbjct: 250 ALIVGLIRALSAMYY--PEAEILAIYAIVLAVLIWKPAGLY 288 >gi|134096410|ref|YP_001101485.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 294 Score = 71.6 bits (174), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 35/298 (11%) Query: 15 LMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPAL----QPFYFFAAIVL 70 ++A+G + FG + VI +HG+ L +GA+ + LT + + P+ A+VL Sbjct: 5 MVAVGFTLFFGVLDVIKFSHGDTLMVGAF-----AGLTASTGVLMLDIGSPWIRLLAVVL 59 Query: 71 SFAVAYGV-GYLTELLLISRLYKRP-LDTLLATWGLSLAMQQTFRSIFGAKEVSATLPDW 128 + G+ G L+ L+K P L+TLLAT L M++ R + S P Sbjct: 60 AAVCVTGLLGAAIAKWLVLPLHKAPPLNTLLATLMLGTVMREAVRLFYPDGSNSQPFP-- 117 Query: 129 LMGSFKPTDAIDIPLNGLFMMGLTVLLTG-----AIFVLLFRSRWGLQVRATMQNRVMSG 183 S PTDAI+ L + +LL+G + L+ R+R G+ +RA Q+ + Sbjct: 118 ---SLLPTDAIEFGGFALRADNVILLLSGLAIIAGVHFLITRTRLGMAIRAVAQDGETAR 174 Query: 184 AVGINTRKVDRTTFALGCGVAGVAGAA----FTTIGSTGPTSGSLYIVDTFLVVVFGGAQ 239 +GIN V TFALG G+A +AG + I G L V F + GG Sbjct: 175 LMGINFEAVVLLTFALGSGMAALAGVMNGLYYNEINF---NVGLLLGVIGFAAAILGGLG 231 Query: 240 SLIGTIASAFSIAQTQSTAEFFLTG-------SMAKVLTLSAVIVILMLRPQGLFSVK 290 ++ G I F A Q L + V + VI+++ +P GL + K Sbjct: 232 NIYGAIIGGFLFAGLQVLGSATLPALIPNIPSAYKDVFAFAVVIILMAWKPTGLIAEK 289 >gi|134095849|ref|YP_001100924.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 291 Score = 68.9 bits (167), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 80/309 (25%), Positives = 138/309 (44%), Gaps = 55/309 (17%) Query: 5 NGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQPFYF 64 +GLS+ + L+ALG I++ +N AHG+ + +GA +L+ ++ + L P Y Sbjct: 10 SGLSIGAIYSLVALGFYIMWSACRSVNFAHGDVMMVGA----VLAVVSNDFG--LSP-YI 62 Query: 65 FAAIVLSFAVAYGVGYLTELLLISRLYKRP-------LDTLLATWGLSLAMQQTFRSIFG 117 + + V YGV L+ R RP + +L T + + M ++F +I Sbjct: 63 GIPLSIVACVLYGV-------LVERFAVRPYTKEANAIGWMLTTIAIGI-MVESFVTI-- 112 Query: 118 AKEVSATLPDWLMGSFK---PTDAIDIPLN----GLFMMGLTVLLTGAIFVLLF------ 164 GSF P+ +D P+ G+++ + + L FV+LF Sbjct: 113 -----------KFGSFARALPSPGVDKPITIFGAGIYLQEMLIPL----FVILFMIGLEV 157 Query: 165 ---RSRWGLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTS 221 R+ G +RA NR+ +G +GIN V +FAL G+ G+AG I T Sbjct: 158 FYRRTMLGRAMRAVAFNRIAAGMMGINVGMVTSFSFALAAGLGGIAGILIGPIIQVSSTM 217 Query: 222 GSLYIVDTFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVIVILML 281 G L + F V + S G + + + E +++ + +V+ S +I++L++ Sbjct: 218 GVLIGLKGFAVAIMASITSARGVVITGLLYGVLEKFVEGYISSAAREVVGFSIMILVLLM 277 Query: 282 RPQGLFSVK 290 PQGLF K Sbjct: 278 FPQGLFGRK 286 >gi|134095639|ref|YP_001100714.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 309 Score = 65.5 bits (158), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 78/308 (25%), Positives = 137/308 (44%), Gaps = 27/308 (8%) Query: 2 QGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQP 61 Q NGL + + L+ALG +++G + +IN AHG+ L IGA + + T AP L Sbjct: 7 QIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTVAPDLPG 66 Query: 62 FY-FFAAIVLSFAVAYGVGYLTELLLISRLYKRP-LDTLLATWGLSLAMQQTF------R 113 AI+ + V V L E + RL P L L+ G+S+ + QTF R Sbjct: 67 IVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSI-LLQTFAMMIWGR 125 Query: 114 SIFGAKEVSATLPDWLMGSF-KPTDAIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQV 172 S +V P ++G+ PT + ++ L + +L+ +++ G + Sbjct: 126 SPLPFPQVMPGEPLHILGALISPTQ--------VMLLILAAASMLLLALLIEKTKLGRAM 177 Query: 173 RATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTS-GSLYIVDTFL 231 RAT +N ++G +G+++ +V TF +G +A +AG + S+ + G + + F Sbjct: 178 RATAENPRVAGLMGVDSNRVIVMTFVIGATLAAIAGVMWAANYSSAQFAMGFVPGLKAFS 237 Query: 232 VVVFGGAQSLIGTIASAFSIAQTQSTAE--------FFLTGSMAKVLTLSAVIVILMLRP 283 V GG ++ G + + +S FL + +I++L LRP Sbjct: 238 AAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRP 297 Query: 284 QGLFSVKV 291 G+ +V Sbjct: 298 SGIMGERV 305 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.328 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 451,756 Number of extensions: 16550 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 5 Length of query: 293 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 212 Effective length of database: 733,452 Effective search space: 155491824 Effective search space used: 155491824 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)