BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2675.p (255 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 140 8e-35 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 137 7e-34 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 122 1e-29 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 116 1e-27 gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 107 8e-25 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 140 bits (352), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 141/252 (55%), Gaps = 16/252 (6%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGSIKF 74 +L I +++ F G +A+ +N+ + + ++ +IGPNGAGKTT ++I G +A SGS + Sbjct: 10 ILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFEL 69 Query: 75 NNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKV------FGALTFK 128 + + H + + G+ R FQ ++ ++ EN+ + GR V FGA+ Sbjct: 70 AGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMV----GRHVRTHQGLFGAVFHH 125 Query: 129 RS-----PDVVARVEAVAADIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEP 183 ++ + AR + + + + A LS+G ++ LEI L +P+LL LDEP Sbjct: 126 KAARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEP 185 Query: 184 VAGMSVSEREKTAELLGRI-SQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEKV 242 AGM+ +E+ ELL +I ++G+++++IEHD+ V + ++TVL GK +AEG V Sbjct: 186 AAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADV 245 Query: 243 QSDPKVIDVYLG 254 Q +P VI+ YLG Sbjct: 246 QKNPAVIEAYLG 257 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 137 bits (344), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 141/253 (55%), Gaps = 18/253 (7%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGSIKF 74 L +D+T++F G A DK++ ++ V VIGPNGAGK+T ++ + G R TSGSI+F Sbjct: 347 CLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEF 406 Query: 75 NNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSF-PRGRKVFGALTFKRSPDV 133 T H + R+G+ R FQ ++ +++ EN+ + R R A T R P Sbjct: 407 MGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFA-TLLRLPSY 465 Query: 134 V---------AR--VEAVAADIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDE 182 AR +E V D + EE +A L G ++ LEI L P+LL+LDE Sbjct: 466 FHDERRYAAEARCLLEYVGLDDYAEE----KARNLPFGHQRRLEIARALAMSPKLLLLDE 521 Query: 183 PVAGMSVSEREKTAELLGRISQGR-SVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEK 241 P AG++ E E +L+ ++ + +V+++EH +D + +++ VTVL GK++A G++ + Sbjct: 522 PAAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAE 581 Query: 242 VQSDPKVIDVYLG 254 V+S+P VI+ Y G Sbjct: 582 VRSNPAVIEAYFG 594 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 122 bits (307), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/261 (34%), Positives = 143/261 (54%), Gaps = 20/261 (7%) Query: 10 SDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATS 69 S A +++ DLT+ F G A+D+LNL++ EV ++GPNG+GKTT +++ G +A+S Sbjct: 17 STATSLVSARDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKASS 76 Query: 70 GSIKFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENL------EMSFPRGRKVFG 123 GSI + E+ + I R GV R FQ + L+VF+N+ M +F Sbjct: 77 GSIIYQGREVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQHGLFFNLFR 136 Query: 124 ALTFKRSPDV-VARVEAVAADIF---LEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLM 179 F+ D VA+VEA+ IF L ++ + S ++ +E+ L+ EP LL+ Sbjct: 137 RKAFRAEYDAYVAKVEAL-LHIFSPPLVARMFEPVETFSMIDRRRIEVCRALLSEPRLLL 195 Query: 180 LDEPVAGMSVSEREKTAELLGRISQGR------SVVVIEHDMDFVKSIAHKVTVLHQGKI 233 LDEP AGM+ ++T L+ I Q R +VV+IEH+M+ +K I + V + GK Sbjct: 196 LDEPSAGMT---HDETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGKK 252 Query: 234 LAEGSMEKVQSDPKVIDVYLG 254 +AEG+ ++ +DP V YLG Sbjct: 253 IAEGTYAEITADPNVQTAYLG 273 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 116 bits (290), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 135/249 (54%), Gaps = 13/249 (5%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRATSGSIKF 74 +L + ++ + F A+ ++L V R E V+GPNGAGKTT+++++ G + T+G++ F Sbjct: 7 LLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNVHF 66 Query: 75 NNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKV----FGALTFKRS 130 N + + + G+ R FQ SI+ L+V E + +S + FG+L R Sbjct: 67 NGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSLFGSRK 126 Query: 131 -PDVVARVEAVAADIF-LEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVAGMS 188 D+V R AD F L L T+ L HG+++ L++ P++++LDEP AG+S Sbjct: 127 VNDIVVRT----ADAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEPTAGVS 182 Query: 189 VSEREKTAELLGRISQG---RSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEKVQSD 245 +++ E L R ++ +++++EHDMD V + ++ + GK +A+ ++ ++ Sbjct: 183 TADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPRDEFFAN 242 Query: 246 PKVIDVYLG 254 ++I + +G Sbjct: 243 EEIISIVVG 251 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 107 bits (266), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 13/245 (5%) Query: 15 VLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTRAT--SGSI 72 VL I L V++ G +AV ++L V++ E+ +IG NGAGKTT L I G G I Sbjct: 5 VLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVDGHI 64 Query: 73 KFNNHELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEM-SFPRGRKVFGALTFKRSP 131 ++ + + +VR + + ++ +S+ ENL M +F R K A ++ Sbjct: 65 EYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDMEKWF 124 Query: 132 DVVARVEAVAADIFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVAGMSVSE 191 V R++ AA + A LS G++Q L + LM P+LL+LDEP G+S Sbjct: 125 AVFPRLKERAAQM---------AGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIM 175 Query: 192 REKTAELLGRI-SQGRSVVVIEHDMDFVKSIAHKVTVLHQGKILAEGSMEKVQSDPKVID 250 EK E++ + +QG +++++E + AH+ V+ G I +G +++ +DPKV + Sbjct: 176 VEKIFEVIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVRE 235 Query: 251 VYLGH 255 YLG Sbjct: 236 AYLGE 240 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 412,544 Number of extensions: 14237 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 44 Length of query: 255 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 175 Effective length of database: 736,747 Effective search space: 128930725 Effective search space used: 128930725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)