BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2674.p (229 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 136 9e-34 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 135 1e-33 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 128 3e-31 gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 124 3e-30 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 122 1e-29 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 136 bits (343), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 133/236 (56%), Gaps = 10/236 (4%) Query: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 + KV L YG + + + V + E V ++G NG GK++ K + G++ GSI++ Sbjct: 5 LLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASGSITL 64 Query: 61 DGVELGGLESHQRVERGVAYVPQGRMIFSHMTVLEN-IQTGLPAAARGKVP------DEL 113 G + GL SH+ V +GVA VP+GR +F+ +V +N I G A R V D + Sbjct: 65 GGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDDIDRM 124 Query: 114 YSLFPVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSL 173 + LFP L + RT++ G+LSGG+QQ L IAR L ++PR+LL+DE + G+ P I+ + L Sbjct: 125 FQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFLFPVL 184 Query: 174 KEIRKIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRANV--DAPTISKYL 227 ++ + + L+I++ EQ+ + L + R V++ G +++ DA + YL Sbjct: 185 VDLNR-QGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAYL 239 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 135 bits (341), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 9/219 (4%) Query: 2 FKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISID 61 V L +GY + V+HDV + VA +I ++G NG GK+TL ++++G+ P R G I + Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 62 GVELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPAAARGKVPDE----LYSLF 117 G L G ++H + G++ +P+GR +F M+V EN+ G V E +Y +F Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYEIF 123 Query: 118 PVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIR 177 P L + + G +SGG+Q ++I R L P++L++DEP+ G+ P +K+ + IR Sbjct: 124 PRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKE---NFNVIR 180 Query: 178 KIRAL--TIVVSEQVLSFTLEIADRFLVIDKGRFVYEDT 214 +I AL T+++ EQ TL I+ V+ +GR + E T Sbjct: 181 RINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGT 219 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 128 bits (321), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 128/213 (60%), Gaps = 10/213 (4%) Query: 4 VSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISIDGV 63 VS L YG +V+ DV L V E++ ++G NG GKTT F ++G++P G I +DGV Sbjct: 7 VSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGV 66 Query: 64 ELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGL-------PAAARGKVPDELYSL 116 ++ H+R + G++Y+PQ +F ++V +NI+ L A ++ ++ L +L Sbjct: 67 DISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLDTL 126 Query: 117 FPVLY--DMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLK 174 L +R + +LSGG+++++ IARALATNPR +LLDEP G+ P + +I R ++ Sbjct: 127 LADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRIVR 186 Query: 175 EIRKIRALTIVVSEQVLSFTLEIADRFLVIDKG 207 +++ R + +++++ + TL I DR +I++G Sbjct: 187 FLKE-RGIGVLITDHNVRETLGICDRAYIINQG 218 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 124 bits (312), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 131/229 (57%), Gaps = 8/229 (3%) Query: 2 FKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILP-LR-GGSIS 59 K++ L YG + + +DL V + E++ ++G NG GKTT K + G LP R G I Sbjct: 6 LKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVDGHIE 65 Query: 60 IDGVELGGLESHQRVERGVAYVPQGRMIFSHMTVLENIQTG-LPAAARGKVPDEL---YS 115 G + GL S + V + +A VP+GR +F+ M++ EN+ G + + D++ ++ Sbjct: 66 YAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDMEKWFA 125 Query: 116 LFPVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKE 175 +FP L + + G LSGG+QQ LA+ARAL ++P++LLLDEP+ G+ P +++ I ++ Sbjct: 126 VFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIFEVIRS 185 Query: 176 IRKIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYE-DTRANVDAPTI 223 + + +TI++ EQ L+ A R V++ G + D + ++ P + Sbjct: 186 V-AAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKV 233 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 122 bits (306), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/216 (37%), Positives = 129/216 (59%), Gaps = 11/216 (5%) Query: 16 VIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISIDGVELGGLESHQRVE 75 V+ D+ + + E+V ++GRNG GK+T F+++MG PL+ G+I + G+++H+ VE Sbjct: 17 VLRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQPLKSGAIKWKRSAINGMQTHKIVE 76 Query: 76 RGVAYVPQGRMIFSHMTVLENIQTGLPAAAR--GKVP----DELYSLFPVLYDMRTRKGG 129 G+ Y P+G +F +TV +NI LP R G+ DE Y++FP L R G Sbjct: 77 LGLGYTPEGSDVFGDLTVEDNI--ALPTWTRKSGRSAQERIDEAYAVFPKLKQYLHRGGQ 134 Query: 130 NLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIRKIRALTIVVSEQ 189 LSGG+++ ++IARALA +P +LLLDE EG+ P+II I+ L+ I K + ++++E Sbjct: 135 QLSGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPTISEGLQSILK-QGRGVLLAES 193 Query: 190 VLSFTLEIADRFLVIDKGRFVYEDT--RANVDAPTI 223 ADR VI++G V+E T +A DA T+ Sbjct: 194 NFYHLPPFADRLYVIERGEIVFEGTLAQAEADAATM 229 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 369,296 Number of extensions: 13548 Number of successful extensions: 188 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 45 Length of query: 229 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 150 Effective length of database: 740,042 Effective search space: 111006300 Effective search space used: 111006300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)