BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2672.p
         (392 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094675|ref|YP_001099750.1| formamidase [Herminiimonas arse...   437   e-124

>gi|134094675|ref|YP_001099750.1| formamidase [Herminiimonas
           arsenicoxydans]
          Length = 410

 Score =  437 bits (1123), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/369 (58%), Positives = 263/369 (71%), Gaps = 9/369 (2%)

Query: 20  HNRWHPDLPFLASVKPGESILIESLDFLDAQIQDTDDVSDVKNVDLTRAHPLTGPFHVEG 79
           HNRWH D+P    V PGE  ++E+ D+    I++ D   DV+++DL+  H LTGP  V G
Sbjct: 21  HNRWHSDIPMATWVNPGEDFILETYDWTGGFIKNNDSADDVRDIDLSIVHFLTGPVGVHG 80

Query: 80  AEPGDLLVIDLLDI--KPVTPVGFSGVFAKENGGGFLADYFPEADKAIWDLKGLYATSRH 137
           AEPGDLLV++LLDI  K  +  GF+G F+K+NGGGFL ++FPEA K+IWD+ GL+ +SRH
Sbjct: 81  AEPGDLLVVELLDIGAKDESMWGFNGFFSKKNGGGFLTEHFPEAQKSIWDINGLFTSSRH 140

Query: 138 IPGVRIAGLTHPGLMGCLPSHDLLAEWNRREAPLAAKG------LAQPPNPSTAVLRGLT 191
           +PGVR AGL HPGL+GCLP   LLAEWN+RE  L A        LA  P   TA +  + 
Sbjct: 141 VPGVRYAGLIHPGLIGCLPDPKLLAEWNKRETGLIATEPDRVPPLANAPFAPTAHMGKMK 200

Query: 192 GAKFDEMAKVAARTVPPREHGGNTDIKDLSAGTRIFFPVYVKGAGFSMGDLHFSQGDGEI 251
           GA  D+ A   ARTVPPREHGGN DIKDLS G++IFFPVYVKGAG S+GDLHFSQGDGEI
Sbjct: 201 GAARDKAAAEGARTVPPREHGGNCDIKDLSRGSKIFFPVYVKGAGLSVGDLHFSQGDGEI 260

Query: 252 GFCGAIEMDGVSHVGFDLIKGGMAKYNITSPIFMPSIVKPHYEQWLTFEGISV-ENGVNY 310
            FCGAIEM G  H+   ++KGGMA Y I +PIF PS + PHY  +L FEGISV E G  Y
Sbjct: 261 TFCGAIEMAGWVHMKVSVLKGGMATYGIKNPIFKPSPITPHYNDYLIFEGISVDEQGKQY 320

Query: 311 YLDATVAYRQACLKAIDYLTHFGYTGSQAYMLLTAAPVEGRIGGIVDIPNCACTVALPTS 370
           YLD  VAYRQACL AI+Y+T FGY+ +QAY +L  APV+G I G+VDIPN   T+ LPT 
Sbjct: 321 YLDVNVAYRQACLNAIEYMTKFGYSRAQAYSILGTAPVQGHISGVVDIPNSCATLWLPTQ 380

Query: 371 IFDQDITPK 379
           IFD DI P 
Sbjct: 381 IFDFDINPN 389


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 850,133
Number of extensions: 38554
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 308
Effective length of database: 723,567
Effective search space: 222858636
Effective search space used: 222858636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)