BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2669.p
         (290 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [...    82   5e-17
gi|134093840|ref|YP_001098915.1| hypothetical protein HEAR0587 [...    80   1e-16
gi|134096239|ref|YP_001101314.1| hypothetical protein HEAR3084 [...    68   6e-13

>gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398
           [Herminiimonas arsenicoxydans]
          Length = 475

 Score = 81.6 bits (200), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 8/188 (4%)

Query: 13  LPTVPKVVQQLIASFNAEDVSSHDIAQQIAADPALTAKVLRLANSAFFHASRTIGTVDDA 72
           LPT+P V  ++I   N  +++   +A+ IA+DPAL+AK+L++ANS  +   R    +  A
Sbjct: 15  LPTLPSVAFRIIELVNDPNINLTQLAECIASDPALSAKMLKVANSPLYTTQRVATNLRQA 74

Query: 73  LRMLGFIMVRNLVLGNGMVAAFKNTRGMDLHQFWRHTLYTAVAARWLAMHAGTSGEDNGD 132
           + M+G      + L   +V +     G  L  FWR T+  A+A R L  H G     N D
Sbjct: 75  VNMMGTHATVTVALSFSLVRSLSGHEGNTL--FWRRTILAALACRLLGKHYGF----NSD 128

Query: 133 AVFTVGMMHGIGQLQLHAVAATAVAPLDKQCNVLDADRAQREKEAWGFHYADVSAELATI 192
            +   G++  IG L L +VA    A L    +  +  +A+R +  +G  + +V   L   
Sbjct: 129 DLLLAGLLQDIGILALRSVAPDEYAELQAITDHEELLKAERNR--FGSGHDEVGYWLLKR 186

Query: 193 WHFPDAMA 200
           W  P+ ++
Sbjct: 187 WGIPEHLS 194


>gi|134093840|ref|YP_001098915.1| hypothetical protein HEAR0587
           [Herminiimonas arsenicoxydans]
          Length = 256

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 16/185 (8%)

Query: 26  SFNAEDVSSHDIAQQIAADPALTAKVLRLANSAFFHASRTIGTVDDALRMLGFIMVRNLV 85
           S   +D   + I +++  D AL AK LR ANS+F+     + T+  A+ ++G   VR++V
Sbjct: 3   SIGPDDDDINIITRKVMLDQALAAKTLRFANSSFYGVQAKVTTIQQAITLIGVDSVRHVV 62

Query: 86  LGNGMVAAF--KNTRGMDLHQFWRHTLYTAVAARWLAMHAGTSGEDNGDAVFTVGMMHGI 143
             N +   F   ++ G++    WRH + TAV AR LA H       N D  FT G++H I
Sbjct: 63  TANALTGYFPSSSSAGLNFIAIWRHAIATAVCARVLARHLHV----NQDYAFTAGLLHDI 118

Query: 144 GQLQLHAV----AATAVAPLD-KQCNVLDADRAQREKEAWGFHYADVSAELATIWHFPDA 198
           G+L L         T +A      C  LDA++A       G  +A     LA  W+F D 
Sbjct: 119 GRLLLITYFRREYDTVIAYRKLHDCQWLDAEQA-----IMGIDHAMAGEALAGHWNFSDT 173

Query: 199 MANAL 203
           + +A+
Sbjct: 174 IRHAI 178


>gi|134096239|ref|YP_001101314.1| hypothetical protein HEAR3084
           [Herminiimonas arsenicoxydans]
          Length = 504

 Score = 67.8 bits (164), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 12/207 (5%)

Query: 7   VDQPGKLPTVPKVVQQLIASFNAEDVSSHDIAQQIAADPALTAKVLRLANSAFFHA-SRT 65
           V Q G LP   +VV  ++ + + ++    ++ + + +DP LT +VLRLANSA + A  + 
Sbjct: 22  VRQRGDLPGFSRVVSAIVGAMHGDNDREFNMTKTVLSDPTLTQRVLRLANSAMYSAFGQG 81

Query: 66  IGTVDDALRMLGFIMVRNLVLGNGMVAAFKNTRGMDLHQFWRHTLYTAVAARWLAMHAGT 125
           I TV  A+ +LG   + +L LG  ++           H   R+ +  AV A  +A    +
Sbjct: 82  INTVSKAVIVLGTETIGHLALGLKLIDGLSAASLATSHT--RNEMEKAVLAGQIARQVAS 139

Query: 126 SG--EDNGDAVFTVGMMHGIGQLQLHAVAA---TAVAPLDKQCNVLDADRAQREKEAWGF 180
           S    D  +AV    ++H +G+L +        T V  +  + N+ + + AQ   E  G 
Sbjct: 140 SSTRRDTEEAV-VCSILHSLGRLMVSFYLPEQWTQVQAVAAEKNIAENEAAQ---EVLGI 195

Query: 181 HYADVSAELATIWHFPDAMANALRSIP 207
              ++ + +   W FP ++  +L+ +P
Sbjct: 196 GLDEIGSLIGKRWGFPYSLVASLKEMP 222


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 545,902
Number of extensions: 20790
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 3
Length of query: 290
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 209
Effective length of database: 733,452
Effective search space: 153291468
Effective search space used: 153291468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)