BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2666.p
         (508 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093498|ref|YP_001098573.1| glycerol kinase [Herminiimonas ...   230   2e-61

>gi|134093498|ref|YP_001098573.1| glycerol kinase [Herminiimonas
           arsenicoxydans]
          Length = 498

 Score =  230 bits (586), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 164/498 (32%), Positives = 239/498 (47%), Gaps = 15/498 (3%)

Query: 4   REAILAIDAGTSGTRAAVVTANGQVSCLHHLPLPIHSPQPGVVEQDAALIWQHTLAVCRA 63
           ++ ILAID GT+ +RA +    GQ+  +     P   P PG VE DA  IW   LAV + 
Sbjct: 2   KKYILAIDQGTTSSRAILFNHAGQIHGMTQQEYPQIFPAPGWVEHDANAIWHSQLAVAQQ 61

Query: 64  TLQQARQKRLQVRAIGLCNQRASAVLWDTVSGQPLAPALVWQDSRHAAQLAKLAVHWERR 123
            L++       + AIG+ NQR + VLWD  +G+P+A A+VWQD R AA   +L    +  
Sbjct: 62  VLKEQHLSAADIAAIGITNQRETTVLWDRQTGEPIAHAIVWQDRRTAALCDQLRADGKAP 121

Query: 124 L-RPRLGRPLGPRSPYLWAAHLLRSNPAVAQAWRQRRLGFGSIDTWLLWQLSAGRLLATS 182
           L + + G  L           LL   P       +  L FG+ID+WL+++LS   +  TS
Sbjct: 122 LFQQKTGLVLDSYFSGTKLKWLLDHTPGARVRAERGELAFGTIDSWLIFKLSGNHVTDTS 181

Query: 183 ATNATACNAYCLDEHAYALDWLQALDFPLELLPPLYQDADDYGMSETSVLGAALPIRACA 242
             NA+    + +    +  + L  LD P  LLP +   +   G + TS+ G ++PI   A
Sbjct: 182 --NASRTLLFNIHTKQWDDELLALLDIPHSLLPAIVPSSGIVGQTYTSLFGQSIPIAGIA 239

Query: 243 GDQLAGAIGLGCLAAGQALCVHGTGSFINLLVGTRA-----PLATGISEQTGSVVVTARR 297
           GDQ A   G  C   G A   +GTG F+ L  GT+A      L T I    G+  V AR 
Sbjct: 240 GDQQAATFGQACHRPGMAKNTYGTGCFMLLNTGTQAIASHNNLLTTIGWTLGN-DVDAR- 297

Query: 298 QQGVSHFALESFCATTGAVLTWACQRQRWFPHARALLSLAASVPHAGGVSFVPALAGIQA 357
               + + LE      GA++ W         H+  + +LA SVP  GGV F+PA +G+ A
Sbjct: 298 ----TDYMLEGSVFMAGAIIQWLRDGLGIIQHSSDVEALATSVPDNGGVVFIPAFSGLGA 353

Query: 358 PQRHSGARAALQGLSLASSRAEIAHALVEGIAQAVAACVHANAEVAGLPVTQLMSGGGLS 417
           P     AR  + G++  S++A IA A +E IA      + A  + A + + +L   GG +
Sbjct: 354 PYWDPYARGTIVGMTRGSNKAHIARAALESIAYQTVDVLEAMQKDAQILLQELRVDGGAA 413

Query: 418 ASDLLLQLQADLTGVPTYRTHQAAHASLRGIAYLAGSQGLLWDDLPQACARTRLRAVFEP 477
            +DLL+Q QAD+  VP  R       +L G AYLAG     W+   +   + ++   FEP
Sbjct: 414 RNDLLMQFQADMLNVPVIRPVVTETTAL-GAAYLAGLAVAFWESKEEIATQWQMERRFEP 472

Query: 478 RLDAAARTARRAPWQARV 495
           R+       R   W   V
Sbjct: 473 RMTDDEHAQRLYTWHRAV 490


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 822,624
Number of extensions: 28294
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 422
Effective length of database: 716,977
Effective search space: 302564294
Effective search space used: 302564294
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)