BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2665.p
         (505 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093380|ref|YP_001098455.1| putative transporter [Herminiim...    72   5e-14
gi|134094220|ref|YP_001099295.1| major facilitator superfamily m...    55   8e-09

>gi|134093380|ref|YP_001098455.1| putative transporter
           [Herminiimonas arsenicoxydans]
          Length = 460

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 148/334 (44%), Gaps = 41/334 (12%)

Query: 38  NSRPSLHGHAGLVWWLLLGGLFLEALSHSALSVGLPAMIGQLGLGPPEVAWLASSAAASA 97
           N + SL G     W       F +++    ++  L ++  + GL   +   LASS+    
Sbjct: 24  NYQRSLFGIIATAW-------FFDSMDLGIMTFVLGSIKAEFGLSTAQAGLLASSSFLGM 76

Query: 98  LLANPLGGWLADRWGRRRPLLLAKLLALG-GAVLVACAPDFASILMGRLLAGIAFGLDFA 156
            L   + G LAD++G R+P+    ++  G G++    A D   +++ R++ G   G++F 
Sbjct: 77  FLGAAIAGMLADKYG-RKPVFQWSMVFWGVGSLACGFAQDVDQLMIFRVILGFGMGMEFP 135

Query: 157 VAMAMLAEITPQHLRSR-LSLWQALWYLAVCGNLLLVLLVEPWDVGQSLWRYPLAATAL- 214
           + ++M++EI P   R + +++ +  W L      +L  L  P  +G   WR    A ++ 
Sbjct: 136 IGLSMVSEIVPAKSRGKYVAILEGFWPLGFIAAGILAYLTLPL-IG---WRGIFIALSVP 191

Query: 215 AAFLMLNLQLLFLVESPCWLARRRRWQECAEALSRLYDAPYFQLLERHPAQHNGGLT--- 271
           AAF+ +  +  ++ ESP WL    R +E  + +S          +E+   + NGGL    
Sbjct: 192 AAFVFVIRR--YVPESPRWLEEVGRNEEAEKVIST---------MEKSVIRANGGLALPE 240

Query: 272 ----KAP-------HASLRQLLHQPYLLRLILAATVQVVQAVQYFAIGWYLPILGLELFG 320
                AP        A   +L H  Y  R I+   +     + Y+ +  +L  L L+  G
Sbjct: 241 PAKQAAPSLLKGDKRALFAELWHGVYAKRTIMLWALWFFALLGYYGLTTWLGAL-LQQAG 299

Query: 321 EDARQAAWGALVFNLCGIAGGLLAPWLARRLGLR 354
            +  ++    +  +L GI G + + WL  + G +
Sbjct: 300 YEVTKSVTYTIYISLAGIPGFIFSAWLLEKWGRK 333


>gi|134094220|ref|YP_001099295.1| major facilitator superfamily
           multidrug transporter; membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 517

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%)

Query: 58  LFLEALSHSALSVGLPAMIGQLGLGPPEVAWLASSAAASALLANPLGGWLADRWGRRRPL 117
           +F+  L  S  +V +PA+ G LG+ P +  W+ +S A +  ++ PL GWL  R+G+ R  
Sbjct: 28  VFMNVLDSSIANVSIPAISGDLGVSPQQGTWVITSFAVANAISVPLTGWLTQRFGQVRLF 87

Query: 118 LLAKLLALGGAVLVACAPDFASILMGRLLAG 148
           + + LL +  + L   AP    ++  R+L G
Sbjct: 88  ISSILLFVLASCLCGLAPSIEILIAARVLQG 118


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 764,030
Number of extensions: 24113
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 505
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 419
Effective length of database: 716,977
Effective search space: 300413363
Effective search space used: 300413363
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)