BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2662.p
         (363 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093379|ref|YP_001098454.1| putative alcohol dehydrogenase ...    83   3e-17

>gi|134093379|ref|YP_001098454.1| putative alcohol dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 412

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 128/313 (40%), Gaps = 32/313 (10%)

Query: 3   HFHNPVTLHAGAGSLAQLPRLLA--GRRALLL---TFPDAAALGLEDSV--AELLGAQLA 55
           HF  P  +  G G+ +QLP LLA  G R+ +    TF       + + +  AE LG    
Sbjct: 8   HFCPPARVVLGCGTRSQLPALLARLGYRSGVFITDTFFSEKTPWVREYIEAAEALGITTI 67

Query: 56  GIDNTVQPNPDVAWLADMYQRLWQQHADV--PCLIALGGGSVIDCAKAMLAPTPSGRFDE 113
             D   + +P      D    +  Q   V    +IALGGGS ID AKA+    P G+   
Sbjct: 68  VFDGG-KADPTTTLCDDATALIRAQIGAVQPDHVIALGGGSNIDLAKALCVTIPDGK--- 123

Query: 114 VLAHLREESAFQPEPTRLKSLIAIPTTAGTGSEVTPWATLWDASGGRKYSLHRPWTWAQA 173
               + E     P   +   LIA+PTTAGTGSE TP A L D S   K ++         
Sbjct: 124 ---PVAEFIGVLPNAPKALPLIALPTTAGTGSEATPGAILIDPSNATKVAVMDNVLRPVI 180

Query: 174 AIIDARLMLSLPAATTLASGLDALSHALEAIWNVH----------------RNPVSSTLA 217
           A+ID     + P   T  SG+DAL+HA+E+   +                 R+ ++   A
Sbjct: 181 ALIDPEYTYTCPPRVTADSGVDALTHAVESYLTLDSAEFDRGGQVDPGYSGRSSLTMMFA 240

Query: 218 VAAARTILVTLPALMRQPRDLALREQMALAALQAGLAFSNTKTALAHSLSYDITLRQGVA 277
             A       L        D   R  MA A+  A L++        H ++Y +       
Sbjct: 241 HEAIDLCARYLVRTYDDGSDTEARIGMAYASHYAALSYGGAGLNAVHGIAYAVAGITHET 300

Query: 278 HGIACSFSLPHIL 290
           HG   +  LP++L
Sbjct: 301 HGSTNAVMLPYVL 313


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 694,702
Number of extensions: 28043
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 280
Effective length of database: 726,862
Effective search space: 203521360
Effective search space used: 203521360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)