BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2659.p
         (144 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094615|ref|YP_001099690.1| hypothetical protein HEAR1391 [...   133   3e-33

>gi|134094615|ref|YP_001099690.1| hypothetical protein HEAR1391
           [Herminiimonas arsenicoxydans]
          Length = 148

 Score =  133 bits (335), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 87/128 (67%)

Query: 14  PYLEALGVEVLAYGEDRAVMALRLKPEFMNSWQVAQGGISMTLLDVAMGLSARAGVPDAK 73
           P+L+ LG+  +  G  +A + L L+   +N WQVA GG+ MT+LD  M L+ R+  PD +
Sbjct: 18  PFLQELGIHTVESGAGQAQVELILQAHHLNGWQVAHGGVIMTMLDNVMSLAGRSMAPDIR 77

Query: 74  SSATVEMSTSFLQPAGHAGETIIARGHTYHRSTTMCFCQAELFNGERLVAKAMGTFKLIR 133
              T+EM TSF+QP G  G  ++A+G   H ST++ FC+ EL+NG+++VAKA GTFK IR
Sbjct: 78  GGVTIEMKTSFMQPGGTTGCRLLAKGRVLHASTSIYFCEGELWNGDKMVAKASGTFKFIR 137

Query: 134 RLDISRKL 141
           R D+++K+
Sbjct: 138 RTDVAKKI 145


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 265,801
Number of extensions: 9466
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 71
Effective length of database: 759,812
Effective search space: 53946652
Effective search space used: 53946652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)