BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2658.p
         (138 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096530|ref|YP_001101605.1| hypothetical protein HEAR3383 [...    56   7e-10

>gi|134096530|ref|YP_001101605.1| hypothetical protein HEAR3383
           [Herminiimonas arsenicoxydans]
          Length = 153

 Score = 55.8 bits (133), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 11/126 (8%)

Query: 19  RFEVFVDEQQVPAEIELDDMDPHCLHAVAYDDAGQP---------LATGRLLPDGHIGRM 69
           R +VFV EQQ     ++D  D    H + +++ G P          A G   P+  +GR+
Sbjct: 26  RQQVFVLEQQC-LYADIDGEDQRAYHLLGWNNDGGPRQLLAYLRCFAPGVTYPETVLGRV 84

Query: 70  AVRKAGRGKGVGGAVLQALMQAARQRGDVEVI-LNAQVQAEGFYQAHGFAREGEQFMEAG 128
              ++ RGKG+G  ++   ++ A Q     V+ ++AQ   E FY   GFA+  + ++E G
Sbjct: 85  LTVQSARGKGLGRQLMAEGIRRAEQHFPGSVMRISAQWHLERFYGEFGFAKASDSYLEDG 144

Query: 129 IAHITM 134
           I HI M
Sbjct: 145 IPHIKM 150


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 240,377
Number of extensions: 7921
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 65
Effective length of database: 759,812
Effective search space: 49387780
Effective search space used: 49387780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)