BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2657.p (508 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 202 2e-53 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 191 6e-50 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 186 2e-48 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 171 1e-43 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 166 2e-42 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 202 bits (515), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 160/507 (31%), Positives = 263/507 (51%), Gaps = 46/507 (9%) Query: 15 GMASSNDKLRYVYEDRTMALVHIARVRDALYTNRDVMGRALMLANVPTAPGPDGASAHEQ 74 G+ SN L+ VY+ RT+AL I+R+ L NR + AL P + ++H Sbjct: 30 GIGRSNGDLQQVYQHRTVALEKISRIDRLLLANRLALSEALH------DPDAEKTASHTA 83 Query: 75 IQQWLGRLKGLDASFEQAWQAYRATRLSPEEQAQAERFEQSWKTYLQE----------RN 124 + + A QAW Y L P+E+ AE F +Q+ + Sbjct: 84 L------IAKNAAEITQAWNEYMDGSLLPDERRLAENFASHRARMVQDGLFPAAAALQKG 137 Query: 125 QVIELIATTQLLQANQSWTQLTPRLASLATELGRLGQLQESLTHESYNAALEEYATLRRH 184 QV+E +Q Q + +L P ++ + L +LQ +Y AA + Y T+R Sbjct: 138 QVVEA------MQLQQQFQKLVP---AVRNSIDALRKLQVDEAGLAYEAAQQRYLTIRNV 188 Query: 185 NLQIAGLALAVGFVIALWIICSLRRQLGGEPDYAAHIVRQIAEGNLGVSVRLRRRDRGSL 244 + G ++ ++ S+ QLGGEP YAA IVR+IA G+L ++ R+ DR SL Sbjct: 189 IATVLGAGAVAATLLGFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLSATIITRKGDRNSL 248 Query: 245 LYAMHTMRERLTEIMHAVTLSTQALEHSSRQLNATAHDLAEASSEQAAAVEEVHSAITNM 304 L AM M++ L + + + ++ + +S Q+ A DL+ + +QA+++EE S++ + Sbjct: 249 LAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLEETASSMEEL 308 Query: 305 SRAIQQTGEHARRTDQIAVAAAADADKSGAAVQTTVAAMRGIARQ-------VGVIDDIA 357 + ++Q HA++ +Q+AV+A+ A + V V M I+ +GVI+ IA Sbjct: 309 TATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVINGIA 368 Query: 358 YQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAHEISVIAQQSVE------ 411 +QTN+LALNAA+EAAR GE GRGF+VVA E+R LA+RS +A EI + S+E Sbjct: 369 FQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVGAGA 428 Query: 412 -MAEQTSQRLVDGTLQGIRQASQQINQITLSSRMQEEGVQEIGSAVAQLNDTTQRNAAAS 470 + +Q + + + I Q + + +IT +SR Q G++++ A+ Q++ TQ+NAA Sbjct: 429 TLVDQAGSTM-NEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAALV 487 Query: 471 EELATTAEVVAERAHELSAQLAYFRLQ 497 EE A A + E+A L ++ F+L+ Sbjct: 488 EEAAAAAGSLQEQACSLVQVVSVFKLE 514 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 191 bits (486), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/317 (39%), Positives = 200/317 (63%), Gaps = 15/317 (4%) Query: 196 GFVIALWIICSLRRQLGGEPDYAAHIVRQIAEGNLGVSVRLRRRDRGSLLYAMHTMRERL 255 G ++ + I +L+ QLGGEP+YAA + +IA G+L V++ LR +D+ S+L+AM MR+ L Sbjct: 205 GILLGVLITRNLKGQLGGEPNYAAGVAARIAAGDLTVAIDLRSKDQTSMLFAMREMRDSL 264 Query: 256 TEIMHAVTLSTQALEHSSRQLNATAHDLAEASSEQAAAVEEVHSAITNMSRAIQQTGEHA 315 I+ V T + +S Q+ A DL+ + EQA+A+EE S++ ++ ++Q E++ Sbjct: 265 ASIVSQVRSGTDTITTASGQIAAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENS 324 Query: 316 RRTDQIAVAAAADADKSGAAVQTTVAAM-------RGIARQVGVIDDIAYQTNLLALNAA 368 ++ +AV A++ A + GA V V M R I +GVID IA+QTN+LALNAA Sbjct: 325 QQASTLAVHASSTAIRGGAVVSQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAA 384 Query: 369 IEAARAGEHGRGFSVVAAEIRKLAERSQGSAHEISVIAQQSVEMAEQTSQRLVD--GT-- 424 +EAARAGE GRGF+VVA+E+R LA+RS +A EI + SVE + S +LV+ GT Sbjct: 385 VEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVEKVDAGS-KLVEQAGTTM 443 Query: 425 ---LQGIRQASQQINQITLSSRMQEEGVQEIGSAVAQLNDTTQRNAAASEELATTAEVVA 481 + GI++ + ++ IT + R Q G++++ A+AQ+++ TQ+NAA EE A ++ + Sbjct: 444 KEIVGGIQRVADIMSDITAAGREQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQ 503 Query: 482 ERAHELSAQLAYFRLQD 498 ++A LS ++ F+L + Sbjct: 504 DQATHLSEIVSVFKLDN 520 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 186 bits (473), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 158/520 (30%), Positives = 273/520 (52%), Gaps = 56/520 (10%) Query: 6 LLLAWRDMLGMAS---SNDKLRYVYEDRTMALVHIARVRDALYTNRDVMGRALMLANVPT 62 LLL +LG+ S +N LR VYEDRT+ + + V N+ + ++ Sbjct: 20 LLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTVITLSTINQLDLAASIYGDPGLV 79 Query: 63 APGPDGASAHEQIQQWLGRLKGLDASFEQAWQAYRATRLSPEEQAQAERFEQSWKTYLQE 122 P D H + QA+ A+ A+ L+PE + A++F K +L++ Sbjct: 80 IPKMDAIEKHSK-------------EINQAFDAFMASTLTPEAKVLADKFAADRKIFLEK 126 Query: 123 RNQVI-------ELIATTQLLQANQSWTQL-TPRLASLATELGRLGQLQESLTHESYNAA 174 Q ++ T+++ N +L TP A +A + +L+E+ +++ + Sbjct: 127 ALQPAIAASRGGNVLRVTEIV--NGPMEELITPVRAGVAALIDL--ELREA--KKAFEES 180 Query: 175 LEEYATLRRHNLQIAGLALAV---GFVIALWIICSLRRQLGGEPDYAAHIVRQIAEGNLG 231 + +R N+ I + V GF +A W+I + R L A I R +A G+L Sbjct: 181 QTRFVMVR--NISIGAIIFGVLLAGF-MAFWLIRLIARPL----HDAVQIARSVAAGDLT 233 Query: 232 VSVRLRRRDR-GSLLYAMHTMRERLTEIMHAVTLSTQALEHSSRQLNATAHDLAEASSEQ 290 + + + G LL A+ M + L++ + AV T+ + +S ++ + DL+ + Q Sbjct: 234 QQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQ 293 Query: 291 AAAVEEVHSAITNMSRAIQQTGEHARRTDQIAVAAAADADKSGAAVQTTVAAM------- 343 A ++EE S++ ++ ++Q ++AR+ +Q+ V+A A K G+ V V M Sbjct: 294 AGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSS 353 Query: 344 RGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAHEIS 403 R I +GVID IA+QTN+LALNAA+EAARAGE GRGF+VVA+E+R LA+RS G+A EI Sbjct: 354 RKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIK 413 Query: 404 VIAQQSVEMAEQTSQRLVD---GTLQ----GIRQASQQINQITLSSRMQEEGVQEIGSAV 456 + SV + S +LVD T+Q ++ + +++IT +S+ Q +G++++ A+ Sbjct: 414 ALIDDSVHKVDAGS-KLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAI 472 Query: 457 AQLNDTTQRNAAASEELATTAEVVAERAHELSAQLAYFRL 496 +Q+++ TQ+NAA E+ A A+ + ++A ELS +A F+L Sbjct: 473 SQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKL 512 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 119/329 (36%), Positives = 194/329 (58%), Gaps = 19/329 (5%) Query: 183 RHNLQIAGL-ALAVGFVIALWIICSLRRQLGGEPDYAAHIVRQIAEGNLGVSVRLRRRDR 241 R L + GL AL +G V+A W+ L R + DYA + R +A G+L + + +D Sbjct: 187 RMLLIVLGLVALTLGIVLA-WM---LTRSITKPLDYAVSVARLVASGDLTGRITVDSKDE 242 Query: 242 -GSLLYAMHTMRERLTEIMHAVTLSTQALEHSSRQLNATAHDLAEASSEQAAAVEEVHSA 300 G LL A+ M + LT + V + +S Q+ + DL+ + EQA+++EE S+ Sbjct: 243 TGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASS 302 Query: 301 ITNMSRAIQQTGEHARRTDQIAVAAAADADKSGAAVQTTVAAMRGI---ARQV----GVI 353 + ++ ++Q ++AR+ +Q+AV A+ A+K G V V M GI AR++ GVI Sbjct: 303 MEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVI 362 Query: 354 DDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAHEISVIAQQSVEMA 413 D IA+QTN+LALNAA+EAARAGE GRGF+VVA+E+R LA+RS +A EI + SV+ Sbjct: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKV 422 Query: 414 EQTSQRLVD-GT-----LQGIRQASQQINQITLSSRMQEEGVQEIGSAVAQLNDTTQRNA 467 + S+ + + GT + +++ + + +I +S+ Q G++++ A+ Q++ TQ+NA Sbjct: 423 DTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNA 482 Query: 468 AASEELATTAEVVAERAHELSAQLAYFRL 496 A EE A AE + E+A L+ ++ F+L Sbjct: 483 ALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 145/517 (28%), Positives = 272/517 (52%), Gaps = 63/517 (12%) Query: 13 MLGMASSNDKLRYVYEDRTMALVHIARVRDALYTNRDVMGRALM----LANVPTAPGPDG 68 +LG+ ++N+ L+ +Y ++ + +A+++ +M R L L V P +G Sbjct: 30 ILGVQTTNNTLQNIYVNQMPS-------SEAIHS---MMTRLLQARAGLNLVAMRPHEEG 79 Query: 69 ASAHEQIQQWLGRLKGLDASFEQAWQAYRATRL-SPEEQAQAERFEQSWKTYLQE----- 122 + ++ L R + E+ W+ Y + + + EE+ A+ YL+E Sbjct: 80 S------ERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVTAKRIRYLKEAEQGL 133 Query: 123 -------RNQVIELIATTQLLQANQSWTQLTPRLASLATELGRLGQLQESLTHESYNAAL 175 RN+ +E I ++ QS T+ T L L Q++ + T Sbjct: 134 IAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVEL--------QMKSAAT------GY 179 Query: 176 EEYATLRRHNLQIAGLALAVGFV-IALWIICSLRRQLGGEPDYAAHIVRQIAEGNLGVSV 234 ++ TL + IA + + +G + +A++ +R G + H IA G+L ++ Sbjct: 180 QDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHF-DTIASGDLTSNI 238 Query: 235 RLRRRDR-GSLLYAMHTMRERLTEIMHAVTLSTQALEHSSRQLNATAHDLAEASSEQAAA 293 ++ R+ G+L+ + M++RLT+ + V + A+ ++ ++ A DL+ + +QAA+ Sbjct: 239 EVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAAS 298 Query: 294 VEEVHSAITNMSRAIQQTGEHARRTDQIAVAAAADADKSGAAVQTTVAAM-------RGI 346 +EE S++ ++ ++Q ++AR+ +Q+A +A+A A K GA V V M R I Sbjct: 299 LEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKI 358 Query: 347 ARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEIRKLAERSQGSAHEISVIA 406 +GVID IA+QTN+LALNAA+EAARAGE GRGF+VVA+E+R LA+RS +A EI + Sbjct: 359 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLI 418 Query: 407 QQSVEMAEQTSQRLVD-GT-----LQGIRQASQQINQITLSSRMQEEGVQEIGSAVAQLN 460 SV + ++ + + GT + +++ + +++I +S+ Q G++++ +A+ Q++ Sbjct: 419 DDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMD 478 Query: 461 DTTQRNAAASEELATTAEVVAERAHELSAQLAYFRLQ 497 + TQ+NAA E+ A A + ++A LS ++ F+LQ Sbjct: 479 EVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQ 515 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.126 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 770,604 Number of extensions: 26947 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 13 Length of query: 508 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 422 Effective length of database: 716,977 Effective search space: 302564294 Effective search space used: 302564294 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)