BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2656.p
         (441 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094610|ref|YP_001099685.1| C4-dicarboxylate transporter Dc...   682   0.0  

>gi|134094610|ref|YP_001099685.1| C4-dicarboxylate transporter DctA
           [Herminiimonas arsenicoxydans]
          Length = 421

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/419 (82%), Positives = 381/419 (90%)

Query: 21  VIGILLGHFYPSTGEAMKPLGEGFVKLIKMIIAPVIFCTVVIGIAGMEDMKKVGKTGGLA 80
           +IG+L+GHF P TG AMKP G+ F+KLIKMIIAPVIFCTVVIGIAGMEDMKKVGKTGG+A
Sbjct: 1   MIGVLVGHFAPETGAAMKPFGDAFIKLIKMIIAPVIFCTVVIGIAGMEDMKKVGKTGGMA 60

Query: 81  LLYFEVVSTVALIIGLLLVNFLQPGVGMNVDPSTLDTKSIASYTAPGKMGSVTDFIMGII 140
           LLYFEV+ST+ALI+GLL+VN LQPG GMN+D ++LD  SIASYTAPGKM +VT+F++ II
Sbjct: 61  LLYFEVMSTLALIVGLLIVNLLQPGAGMNIDVNSLDIASIASYTAPGKMETVTEFLLHII 120

Query: 141 PTSMFDAFAKGDVLQVLLVAVLFGFALHKFGGRGTLVFDFIEKISHVLFSVVGAIMKVAP 200
           P+SM DAFAKGDVLQVLLV+VLFGFALHKFGGRGTLVFDFIEK+SHVLFS+VG IMK AP
Sbjct: 121 PSSMIDAFAKGDVLQVLLVSVLFGFALHKFGGRGTLVFDFIEKVSHVLFSIVGLIMKAAP 180

Query: 201 IGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLFIFVVLGIITRLHGFSIWKFVKYIK 260
           IGAFGAM+FTIGKYG+ SL SL KLMGTFYLTCL FIFVVLGI++RLHGFSIWKFVKYIK
Sbjct: 181 IGAFGAMAFTIGKYGIASLLSLGKLMGTFYLTCLFFIFVVLGIVSRLHGFSIWKFVKYIK 240

Query: 261 EELLIVLGTSSSESVLPRMLAKMENAGAKKTVVGLVIPTGYSFNLDGTAIYLTMAAVFIA 320
           EELLIVLGTSSSESVLPRM+AKMEN GAKK+VVGLVIPTGYSFNLDGTAIYLTMAAVFIA
Sbjct: 241 EELLIVLGTSSSESVLPRMIAKMENLGAKKSVVGLVIPTGYSFNLDGTAIYLTMAAVFIA 300

Query: 321 QATNTPMTFVQELTLLGVLLLTSKGAAGITGSGFIVLAATLSAVGHVPVAGLALILGIDR 380
           QATNTPMT +Q++TLLGVLLLTSKGAAGITGSGFIVLAATLSAVGHVPVAGLALILGIDR
Sbjct: 301 QATNTPMTLMQQITLLGVLLLTSKGAAGITGSGFIVLAATLSAVGHVPVAGLALILGIDR 360

Query: 381 FMSEARALTNTIGNGVATLVVAKWSGELDSERLTKVLNNETVEDAQAPEAVLDRTEAKM 439
           FMSEARALTNTIGNGVATLVVA+W  +LD + L   LNNET   A  PE +LD    K+
Sbjct: 361 FMSEARALTNTIGNGVATLVVARWGNDLDMQTLHAQLNNETAVAANEPEKILDMVNNKL 419


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.141    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 790,119
Number of extensions: 32071
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 356
Effective length of database: 720,272
Effective search space: 256416832
Effective search space used: 256416832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)