BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2655.p (303 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 186 1e-48 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 152 2e-38 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 145 3e-36 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 144 6e-36 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 139 2e-34 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 186 bits (473), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 104/290 (35%), Positives = 161/290 (55%), Gaps = 10/290 (3%) Query: 12 IELFCKAAELGSFTAAAEALGVTPASVSRSISRLETRLGVRLFARTTRQIRLTREGQLYH 71 ++ F E SFTAA L ++ A VS+ + LE LG RL RTTR++ LT G Y+ Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 72 EQCRQALEQIAETERFLTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQARYPQIEVEVS 131 E+C Q L + E E+ +P G L++++ + R+ PLL + RYP++ ++++ Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 132 IANRVIDFVEEGYDLAIRLGIPQDSRLIAHPLEDATLGVFAAPAYLQRRGTPHSVAELEQ 191 +A+R +D +E+GYDLAIR+G +S LIA L + + A+PAYLQ G P + +L+Q Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQ 180 Query: 192 HDCIQFILPSTGRAMPWIFKDAQGRD---VDFHFKSRQRIHDDVLGCVNWAIAGGGLFQI 248 H C+ + S+G W+F + R VD ++ + D+L A+ G GL Sbjct: 181 HACLNYSYSSSGD--EWVFGKGKTRAAVRVDGPMRAN---NGDMLRLA--ALDGAGLIWQ 233 Query: 249 YHFIAQAAVQRGELVEVLQAAGHRTRRFSILYPHNRHLSARVRAFVDFLI 298 HFI VQ G LVE+++ +YP +HLSA+VR FVD+L+ Sbjct: 234 PHFIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYLV 283 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 152 bits (384), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 152/293 (51%), Gaps = 5/293 (1%) Query: 9 LGSIELFCKAAELGSFTAAAEALGVTPASVSRSISRLETRLGVRLFARTTRQIRLTREGQ 68 + + F + GS AAA+ LGVTP SVS+ ++ +E RL VRL RTTR+I LT EG+ Sbjct: 4 ISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGE 63 Query: 69 LYHEQCRQALEQIAETERFLTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQARYPQIEV 128 +Y + + ++ E+ ++G GLL+IS + + P L F YP+++V Sbjct: 64 IYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDV 123 Query: 129 EVSIANRVIDFVEEGYDLAIRLGIPQDSRLIAHPLEDATLGVFAAPAYLQRRGTPHSVAE 188 ++ + +R ++ VE+G+D IR G D+RL A + D V A+PAYL+ G P + + Sbjct: 124 QLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLTPRD 183 Query: 189 LEQHDCIQFILPSTGRAMPWIFKDAQGRDVDFHFKSRQRIHDDVLGCVN-WAIAGGGLFQ 247 L++H+CI + S W F ++ K R + + C WA+ G G+ Sbjct: 184 LQKHNCI-LLRESDEIYGSWHFSSGTKQET---VKVRGSLSANDGECATAWALDGQGIVV 239 Query: 248 IYHFIAQAAVQRGELVEVLQAAGHRTRRFSILYPHNRHLSARVRAFVDFLIEA 300 + ++ G L VL+ I++P HLSA+ RA VDF+++A Sbjct: 240 RSEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFMLQA 292 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 145 bits (365), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 145/290 (50%), Gaps = 3/290 (1%) Query: 8 QLGSIELFCKAAELGSFTAAAEALGVTPASVSRSISRLETRLGVRLFARTTRQIRLTREG 67 +L IE F A E SF AAA AL VTP V R I LE RLGVRL R+TR++ LT EG Sbjct: 3 KLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTEEG 62 Query: 68 QLYHEQCRQALEQIAETERFLTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQARYPQIE 127 +Y E CR+ L ++ + E L+ SG L IS + + P F ++P ++ Sbjct: 63 SVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPGLK 122 Query: 128 VEVSIANRVIDFVEEGYDLAIRLGIPQDSRLIAHPLEDATLGVFAAPAYLQRRGTPHSVA 187 + ++ +RV+D V+EGYD+ IR+G D +A L V P Y ++ G P ++ Sbjct: 123 MSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKTLD 182 Query: 188 ELEQHDCIQFILPSTGRAMPWIFKDAQGRDVDFHFKSRQRIHDDVLGCVNWAIAGGGLFQ 247 +L +H+C+ F L G+ W F + +G+ V + +D L W G G+ Sbjct: 183 DLAKHNCLAFNLQG-GQQRGWYF-NHRGKTVSVRAQGSLDCNDGEL-LHRWMSEGLGIAW 239 Query: 248 IYHFIAQAAVQRGELVEVLQAAGHRTRRFSILYPHNRHLSARVRAFVDFL 297 + Q+ ++ G L VL +YP R++ A+VR F+ L Sbjct: 240 RSVWEIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFISHL 289 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 144 bits (363), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 154/289 (53%), Gaps = 8/289 (2%) Query: 11 SIELFCKAAELGSFTAAAEALGVTPASVSRSISRLETRLGVRLFARTTRQIRLTREGQLY 70 ++ F + G+ AAA+ LG T ++VSR +SRLE +L L RTTR++ LT EG+L+ Sbjct: 7 DLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLF 66 Query: 71 HEQCRQALEQIAETERFLTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQARYPQIEVEV 130 ++ R L + E E + +++ PSG LRI P+ + ++P + F+A YPQI +E+ Sbjct: 67 LKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLEL 126 Query: 131 SIANRVIDFVEEGYDLAIRLGIPQDSRLIAHPLEDATLGVFAAPAYLQRRGTPHSVAELE 190 + ++V D +E D+AIR+G QDS L A L L + A+P YLQR G P + +L Sbjct: 127 TSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQLA 186 Query: 191 QHDCIQFILPSTGRAMPWIFKDAQGRDVDFHFKSRQRIHDDVLGCVNWAIAGGGLFQIYH 250 H + F+ +G P +G V + + L + A+ G G+ + Sbjct: 187 GHQLLGFLQFESGNTWPIRHAGGEGLTVTPALFASS---GETLRAL--ALHGQGIASLAD 241 Query: 251 FIAQAAVQRGELVEVLQA--AGHRTRRFSILYPHNRHLSARVRAFVDFL 297 ++ + + G LV +L+ G+R + ++ Y N LS R+ F++FL Sbjct: 242 YMTRDDIAAGRLVRILENYYTGYRQQIHAVYY-RNTQLSRRISCFLEFL 289 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 150/291 (51%), Gaps = 5/291 (1%) Query: 12 IELFCKAAELGSFTAAAEALGVTPASVSRSISRLETRLGVRLFARTTRQIRLTREGQLYH 71 + +F AAE SF AA LG +P V+R+I +LE G LF R+TRQ+R+T G+ Sbjct: 8 LRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITAFGEGLL 67 Query: 72 EQCRQALEQIAETERFL-TGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQARYPQIEVEV 130 +Q R ALE+ + R + QQ SG +RI+ +LP L R AR+P I ++V Sbjct: 68 DQVRPALERFEDLWRTPGSDQQASLSGTVRITAPHSLGTRAVLPALERVAARHPDITLDV 127 Query: 131 SIANRVIDFVEEGYDLAIRLGIPQDSRLIAHPLEDATLGVFAAPAYLQRRGTPHSVAELE 190 +++R+ + V+EG D+ IR+G +DSR +A D L + AAP +++ G P ++ L Sbjct: 128 RLSDRISNTVDEGIDVGIRVGFMRDSRFVARKAADMKLPIVAAPRLIKKVGVPENIDALS 187 Query: 191 QHDCIQFILPSTGRAMPWIFKDAQGRDVDFHFKSRQRIHDDVLGCVNWAIAGGGLFQIYH 250 + +TGR PW FK GR + + + D+ + A+AG Q+ Sbjct: 188 SLPATVALDINTGRPWPWHFK--AGR--QWTPAAPTLVADNADMEMGAALAGIAFAQLAD 243 Query: 251 FIAQAAVQRGELVEVLQAAGHRTRRFSILYPHNRHLSARVRAFVDFLIEAV 301 ++A + G+LV VL++ + P + RVRA D ++ AV Sbjct: 244 YMAAPYIASGKLVRVLESEEPPAWGLYVYRPQRGPIPGRVRAVFDEMLVAV 294 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.326 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 550,103 Number of extensions: 22304 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 11 Length of query: 303 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 222 Effective length of database: 733,452 Effective search space: 162826344 Effective search space used: 162826344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)