BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2647.p
         (132 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095582|ref|YP_001100657.1| putative biopolymer transport p...    59   6e-11

>gi|134095582|ref|YP_001100657.1| putative biopolymer transport
           protein ExbD/TolR; putative TOLR-related transport
           transmembrane protein [Herminiimonas arsenicoxydans]
          Length = 146

 Score = 59.3 bits (142), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 20/142 (14%)

Query: 3   RTRYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLT 62
           R R  +S+   I ++P ID+MM LL+ FMVT   M++ S  +I +P AA +   P++ + 
Sbjct: 12  RNRKFKSE---INVVPYIDVMMVLLVIFMVTA-PMVNPS--EIELPNAAKSTLPPTEYIR 65

Query: 63  I--------VVNQQGEMFFEGKPVQHDALVGELKERAQT-----AKLEVLVAGDKDVSLE 109
           I         V+ QG+     KP +  A  GEL ++ QT       + V++A DK++  +
Sbjct: 66  IDLKADASATVSVQGKK-GGAKPGETVATRGELGKKLQTLVADNPDIAVMIAADKNIKYD 124

Query: 110 NLLHVMDVAREAGVEDIGIAAK 131
            ++  +  A++ G+  +G+A K
Sbjct: 125 EVIQAISEAKKLGISRVGLATK 146


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 228,220
Number of extensions: 8146
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 60
Effective length of database: 763,107
Effective search space: 45786420
Effective search space used: 45786420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)