BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2643.p
         (282 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094616|ref|YP_001099691.1| hypothetical protein HEAR1392 [...   337   3e-94

>gi|134094616|ref|YP_001099691.1| hypothetical protein HEAR1392
           [Herminiimonas arsenicoxydans]
          Length = 260

 Score =  337 bits (865), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 154/238 (64%), Positives = 190/238 (79%)

Query: 1   MCLIIFAWKVIPGMPLILAANRDEFYARPAAHADWWNDHPHIYAGRDLQGGGTWLGVTRD 60
           MCLI+FAW+V+P MPL+ A NRDEFY RPA+ A WW+DHP IYAGRDLQGGGTW+G+TRD
Sbjct: 1   MCLIVFAWQVMPNMPLLAAGNRDEFYDRPASPAGWWHDHPQIYAGRDLQGGGTWMGITRD 60

Query: 61  GRFAAITNVRAPAERRSDAPTRGQLVADYLAGTLEPQDYLRQIEASAQQYNGFNLLLGNR 120
           GRFAA+TN+RAP+E R DAPTRG LV +YLAGT  P  Y+ +I   A  YNGFNLL+GN+
Sbjct: 61  GRFAAVTNIRAPSEIRPDAPTRGNLVLNYLAGTTTPTGYVEEISPHAADYNGFNLLVGNK 120

Query: 121 DTMLWYSNRGGEDARNGQPLDYGVYGLSNALLDTPWPKLTRAKAQFASLLCQGAPEETFF 180
           D ++WYSNRG +D RNG+P+  G+YGLSN+LLD  WPK+   KA+FASLLCQGAPE+ FF
Sbjct: 121 DELIWYSNRGEKDERNGKPMKPGMYGLSNSLLDCTWPKVVSVKAEFASLLCQGAPEDAFF 180

Query: 181 EMLTDGTRANDCRLPDTGIGLEKERMLSPIFIRSPDYGTRCSTVLRVPIIGEPVLTEQ 238
           EML+D T A DCRLP TG+ LE+ER+LS + I S DYGTR ST++++     PVL E+
Sbjct: 181 EMLSDTTCAADCRLPKTGVSLERERLLSAVCITSHDYGTRVSTLVKLQTDQAPVLLER 238


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 612,132
Number of extensions: 27473
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 201
Effective length of database: 733,452
Effective search space: 147423852
Effective search space used: 147423852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)