BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2641.p
         (354 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094618|ref|YP_001099693.1| hypothetical protein HEAR1394 [...   407   e-115

>gi|134094618|ref|YP_001099693.1| hypothetical protein HEAR1394
           [Herminiimonas arsenicoxydans]
          Length = 352

 Score =  407 bits (1045), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/350 (58%), Positives = 256/350 (73%), Gaps = 5/350 (1%)

Query: 9   SAWRDFLTQQGAQFDAESN-----DVLGFGPDAPAPQSLESFMAPLTGLGLIAATGEEAA 63
           + W +FL +QGAQF    +     ++L FG    +      F+AP+  LGLIAA+G+EAA
Sbjct: 2   TTWLNFLAEQGAQFGTSGSAEAVPELLHFGAQMTSETPRTDFVAPIIYLGLIAASGDEAA 61

Query: 64  SFLHGQLTNDVQHLDSNAARLAGYCSPKGRLLATLLIWRDAQTIYLQLPRSLQPAIQKRL 123
            FLH QLTNDV+HLD+ AARLAGYCSPKGRLLA+LLIW+ A  I LQLPR LQ ++QKRL
Sbjct: 62  HFLHSQLTNDVEHLDAGAARLAGYCSPKGRLLASLLIWKTADGIMLQLPRELQASVQKRL 121

Query: 124 QMFIMRAKAKLADAGTEYAVLGLVGPAAANALAEWFPVTPAAPYDKLDNSHGSLIRMADA 183
           QMF++RAKA+L DA   + +LGL GPAA+  L +WFPV PAA YDK +++ G+LIR  DA
Sbjct: 122 QMFVLRAKARLIDATENHVMLGLAGPAASKVLQQWFPVLPAAIYDKAESAAGTLIRHPDA 181

Query: 184 AGSARYQWIAPVDTLTAAWPKLAQHLKPTASLAWRLSDIRAGVPGIVAATQEQFVPQMIN 243
            G+ARYQWI        AWP+L + L+   + AW+L++I +GVP I  ATQE+FVPQMIN
Sbjct: 182 FGTARYQWITTAAQAVEAWPQLTKVLQAAGAAAWQLAEIDSGVPHISIATQEKFVPQMIN 241

Query: 244 FELIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIDSAAAQAGQEVFAAADPGQPCG 303
           FELIGGVNF+KGCYPGQEIVARSQYLGKLKRR + A + +A+A+ G E+F+ +DP QPCG
Sbjct: 242 FELIGGVNFRKGCYPGQEIVARSQYLGKLKRRMLHAKVSAASAEPGTEIFSVSDPEQPCG 301

Query: 304 MVVNAEALDDGRALALVEMKLAAADDTVHLGAADGPALHFHALPYELADP 353
           MVVNAE  +      LVE+KLAAA+  V LG+A GP L F  LPY L DP
Sbjct: 302 MVVNAERTNAQEIACLVEIKLAAAESEVRLGSAQGPVLLFQPLPYPLTDP 351


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 683,838
Number of extensions: 27129
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 271
Effective length of database: 726,862
Effective search space: 196979602
Effective search space used: 196979602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)