BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2638.p
         (345 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094621|ref|YP_001099696.1| DNA polymerase III subunit delt...   462   e-131
gi|134094277|ref|YP_001099352.1| DNA polymerase III subunit tau/...    74   1e-14

>gi|134094621|ref|YP_001099696.1| DNA polymerase III subunit delta'
           [Herminiimonas arsenicoxydans]
          Length = 343

 Score =  462 bits (1188), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/341 (65%), Positives = 272/341 (79%), Gaps = 3/341 (0%)

Query: 7   EVLLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPQAHACGV 66
             L PWQ  SW+Q Q+LRERLPHA+LF+G  G GKT F EA A+SLLCE+P    HACG 
Sbjct: 2   NTLYPWQHASWQQWQKLRERLPHAILFHGPEGIGKTAFAEACAQSLLCETPNTDGHACGT 61

Query: 67  CASCNWFSQSNHPDYRRVRPEMLEEEMAEDEAGE---EKKSTKASKAPSKDIKIDQIRAL 123
           CA+C WF Q +HPDYRRVRPE+L++  + +       + K +K++KAPSK+IKIDQIRAL
Sbjct: 62  CAACGWFGQYSHPDYRRVRPEILDDGESAEGEEAEAGDTKKSKSTKAPSKEIKIDQIRAL 121

Query: 124 ADFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLPTIL 183
           +DFMN+STHRSG+RVV LYPAEALNTAAAN+LLK LEEPPP TMFLL +N +DRLLPTIL
Sbjct: 122 SDFMNISTHRSGMRVVTLYPAEALNTAAANSLLKMLEEPPPNTMFLLATNSIDRLLPTIL 181

Query: 184 SRCRKFALTAPGHDEALAWLKQQGVKDADAWLAEQGGAPLAALQAAQGEGREALDELLRH 243
           SRCRKFAL  PG +E L WL+ Q VKDAD+WLAEQGGAPLAAL ++Q   RE LDE L+ 
Sbjct: 182 SRCRKFALAMPGAEETLQWLQAQQVKDADSWLAEQGGAPLAALASSQAGARETLDEFLQQ 241

Query: 244 LAQPGVDGALRAADKLQKTPAAELVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRLAGR 303
           LAQPGVD AL+ A++LQKTP  ELV W+QRWLYD+LS+K +G +RYYPR+ KEL  LA R
Sbjct: 242 LAQPGVDAALKTAERLQKTPVTELVAWLQRWLYDVLSVKLSGTIRYYPRHQKELAALAAR 301

Query: 304 VEALALTRALRGMGERRAIADHPLSAKLFIEEMLIDYARLF 344
            +A AL +A++ + ERRAIADHPL+ KLFIE+ML+DY+ LF
Sbjct: 302 ADAGALLQAIKMLNERRAIADHPLAPKLFIEDMLLDYSTLF 342


>gi|134094277|ref|YP_001099352.1| DNA polymerase III subunit
           tau/gamma [Herminiimonas arsenicoxydans]
          Length = 682

 Score = 73.6 bits (179), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 74/179 (41%), Gaps = 31/179 (17%)

Query: 24  RERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPQ----AHACGVCASCNWFSQSNHP 79
            +RL HA LF G  G GKT      AKS  C  P       A  CGVC +C         
Sbjct: 34  NKRLHHAYLFTGTRGVGKTTLSRILAKSFNCIGPDGNGDITATPCGVCEACVAIDAGRFV 93

Query: 80  DYRRVRPEMLEEEMAEDEAGEEKKSTKASKAPSKDIKIDQIRALADFMNVSTHRSGLRVV 139
           DY       +E + A +                    +D++  L +    +   +  +V 
Sbjct: 94  DY-------IEMDAASNRG------------------VDEMAQLLEQAVYAPSNARFKVY 128

Query: 140 MLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLPTILSRCRKFAL--TAPGH 196
           M+     L   A N++LKTLEEPP    F+L +    ++  T+LSRC +F L    PGH
Sbjct: 129 MIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGH 187


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 527,415
Number of extensions: 16803
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 263
Effective length of database: 730,157
Effective search space: 192031291
Effective search space used: 192031291
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)