BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2636.p (182 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095864|ref|YP_001100939.1| putative two-component response... 135 1e-33 gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 66 1e-12 gi|134096598|ref|YP_001101673.1| two-component regulatory system... 60 6e-11 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 55 3e-09 gi|134093856|ref|YP_001098931.1| two-component system response r... 55 3e-09 >gi|134095864|ref|YP_001100939.1| putative two-component response regulator [Herminiimonas arsenicoxydans] Length = 178 Score = 135 bits (340), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/178 (45%), Positives = 108/178 (60%), Gaps = 9/178 (5%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLE-KDSGLQ 63 LI++D+ FA TL RS RR +R +A S +EA ++E+ +A +DL+L SGL Sbjct: 7 LLIIEDDGAFARTLGRSFERRNYRVLLASSQDEAAALLQQEKPAYAVVDLKLNGHTSGLA 66 Query: 64 WVSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAEGAAA 123 V L + P +++VLTG+AS+ T V+AIK GA YLAKP+N D I +A H A Sbjct: 67 CVQMLHKHDPAMQIVVLTGFASLNTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGN--- 123 Query: 124 AEPVLPVEEAS-PLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 + VE + S++ LEWEHI VLAE + NIS AR L MHRRTL RKL K+ V Sbjct: 124 ----VDVELGNRSTSIKTLEWEHIHAVLAESDFNISEAARRLGMHRRTLARKLEKQRV 177 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 65.9 bits (159), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 7/169 (4%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQW 64 L+ +D+ V A L RSL + G+ +G EA A + FD +DL L K SGL+ Sbjct: 3 ILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGLEV 62 Query: 65 VSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAEGAAAA 124 + LR + +L+LT SI V+ + GAD+++AKP + + + + A Sbjct: 63 LQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGAGG 122 Query: 125 EPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQR 173 P V + PLS ++ + R+ ++ + +AR L + LQR Sbjct: 123 GPT--VIKHGPLS-----YDQVGRIAYINDQMLELSARELGLLEVLLQR 164 >gi|134096598|ref|YP_001101673.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 474 Score = 60.1 bits (144), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%) Query: 4 AFLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQ 63 + LI+DD S L R+L R R S E A FD +D L SG++ Sbjct: 38 SILIVDDEPGMRSFLQRTLEDRCSRVEAVDSVEAASVLLDSRHFDLIILDNSLPGKSGVE 97 Query: 64 WVSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHA 117 W+ +R ++++T +A + T + A+++GA ++L KP V+ ILSA+ Sbjct: 98 WLHEMRALGLHNDVVLITAFADLETAIHALRAGAADFLLKPFRVNQILSAIGRC 151 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 56/103 (54%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQW 64 LI++D+ V A+ L R+L + G+ A +GE+A A + + +D+ L K GL Sbjct: 3 ILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGLAV 62 Query: 65 VSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANV 107 + LR+ + +L+LT ++ V + GAD+Y+ KP ++ Sbjct: 63 LRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDL 105 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 15/167 (8%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQW 64 L+++D L R LA GF +A +G + L A E D +D+ L SG + Sbjct: 3 ILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGWEL 62 Query: 65 VSPLR-----QALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAE 119 ++ LR Q +P ++ LT + V+ ++ GAD+YL KP +L+ + Sbjct: 63 LTALRSQADKQHIP---VICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLR 119 Query: 120 GAAAAEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNM 166 + PV + + + +E + ++R + + I+ TA+ + Sbjct: 120 RS-------PVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGL 159 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.128 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 246,835 Number of extensions: 6712 Number of successful extensions: 78 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 7 Length of query: 182 Length of database: 1,000,347 Length adjustment: 76 Effective length of query: 106 Effective length of database: 749,927 Effective search space: 79492262 Effective search space used: 79492262 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)