BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2635.p
         (259 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094624|ref|YP_001099699.1| metallo-dependent hydrolase [He...   389   e-110
gi|134095405|ref|YP_001100480.1| TatD family hydrolase [Herminii...   115   2e-27

>gi|134094624|ref|YP_001099699.1| metallo-dependent hydrolase
           [Herminiimonas arsenicoxydans]
          Length = 242

 Score =  389 bits (999), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/240 (78%), Positives = 215/240 (89%)

Query: 18  LPEIFGKMAENQVSHALCVSVDLPDFPQVLALAEQYPNVYASVGVHPDYEDTPEPSLEEL 77
           +PEI GKMAEN+VSHALCVS DLP+FP VL LAE+YPN+YASVGVHPDYEDTPEPS+++L
Sbjct: 1   MPEILGKMAENEVSHALCVSCDLPNFPGVLELAERYPNIYASVGVHPDYEDTPEPSVDDL 60

Query: 78  VRLADHPRIVAIGETGLDYYRLQGDLEWQRERFRTHIRASRATGKPLIIHTRSASEDTLR 137
           +RL+DHP+IVAIGETGLDYYRL+GDLEWQRERFR HIRASRATGKPLIIHTR+ASEDT+R
Sbjct: 61  IRLSDHPKIVAIGETGLDYYRLEGDLEWQRERFRRHIRASRATGKPLIIHTRAASEDTIR 120

Query: 138 ILREEGASPAAGGVAGVMHCFTESQEVADAAIELGFYISFSGIVTFKSAKDLQQVARTIP 197
           I+REEGA   AGG AGVMHCFTES EVA AA+E+GFYISFSGIVTFKSAKDLQ VAR +P
Sbjct: 121 IMREEGAGTDAGGAAGVMHCFTESLEVAKAAMEMGFYISFSGIVTFKSAKDLQSVAREVP 180

Query: 198 LERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEFIADLRGISAAEVARQTSDNFFKLFAI 257
           LE+MLIETDSPYLAPVP RGK NEPG VRHV E++A L+ +    +A+QT+DNFF LF I
Sbjct: 181 LEQMLIETDSPYLAPVPHRGKVNEPGLVRHVAEYLALLKDVPLERIAQQTTDNFFNLFKI 240


>gi|134095405|ref|YP_001100480.1| TatD family hydrolase
           [Herminiimonas arsenicoxydans]
          Length = 265

 Score =  115 bits (289), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 131/257 (50%), Gaps = 15/257 (5%)

Query: 1   MYIDSHCHINFPDLAARLPEIFGKMAENQVSHALCVSVDLPDFPQVLALAEQYPNVYASV 60
           M+ID+HCH++  + AA    +        V+  +  +V   +F  V ALA ++ N   ++
Sbjct: 1   MWIDTHCHLDAAEFAAEEDAVAASALRQGVTMIVIPAVARDNFATVAALAHRHVNCTYAL 60

Query: 61  GVHPDY-----EDTPEPSLEELVRLADHPRIVAIGETGLDYYRLQGDLEWQRER----FR 111
           G+HP +     ED        +    +  R VAIGE GLD++         RE+    + 
Sbjct: 61  GIHPIFVPQAQEDDLAAMRAAVEAAMNDSRFVAIGEIGLDFFVPALTSPAMREKQEFFYV 120

Query: 112 THIRASRATGKPLIIHTRSASEDTLRILREEGASPAAGGVAGVMHCFTESQEVADAAIEL 171
             ++ +R  G P+++H R + +  L+ LR       AGG+A   H F  S + A+  + L
Sbjct: 121 EQLKIARDFGLPVLLHVRKSQDSILKYLRR---IKVAGGIA---HAFNGSVQQAETFMAL 174

Query: 172 GFYISFSGIVTFKSAKDLQQVARTIPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEF 231
           GF + F G +TF  A  ++++A T+PL  +++ETD+P ++P     + N P  +  +G+ 
Sbjct: 175 GFKLGFGGAMTFTRALQIRRLAATLPLASIVLETDAPDISPAWLHPQRNSPEQLARIGQI 234

Query: 232 IADLRGISAAEVARQTS 248
           +A+LR + A  +A  TS
Sbjct: 235 LAELREMPATAIAEITS 251


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 463,022
Number of extensions: 18392
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 179
Effective length of database: 736,747
Effective search space: 131877713
Effective search space used: 131877713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)