BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2634.p
         (223 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094625|ref|YP_001099700.1| hypothetical protein HEAR1401 [...   190   4e-50

>gi|134094625|ref|YP_001099700.1| hypothetical protein HEAR1401
           [Herminiimonas arsenicoxydans]
          Length = 227

 Score =  190 bits (483), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 135/199 (67%), Gaps = 1/199 (0%)

Query: 25  LPGAARAGAYEEYFQAIRMDNVYFLKQLMQRGMGPNLIEPKRGYTGLMLAIREDSMKAFD 84
           LP  A AGAYE+YFQA++ D+   +  L+QRG  PN IEP+RG +GL+LA+RE +MK F 
Sbjct: 26  LPMLAHAGAYEDYFQAVKGDDAATVTSLLQRGFDPNTIEPERGDSGLVLAVREKAMKVFS 85

Query: 85  VLVNAPDVNLEAQATNGDTPLMLASFYGNVPVVKLLLARQVEVNRPGWTALHYAAINGSS 144
           VL+ A    ++ Q  NGDT LM+A++  N   V  LLA+   VN+ GWT LHYAA +G+ 
Sbjct: 86  VLLQARGTKVDLQIKNGDTALMIAAYTANRQAVAALLAKGAAVNKSGWTPLHYAAASGND 145

Query: 145 EIVKLLLDASAYVDAESPDDKMTPVMLAAMRGRVAAVEVLRDNGADLSLKNKDGLTAMDL 204
           EIVK+LLD +A +DA SP +K TP+M+AA  G +  V+ L D GAD +LKN  G+TA+D 
Sbjct: 146 EIVKMLLDKAAVLDAPSP-NKTTPIMMAARGGHIYVVKTLLDAGADATLKNDAGMTAIDF 204

Query: 205 AKRYGQDGVIDALNEKPRQ 223
           A++ G   +++ L  + ++
Sbjct: 205 ARQNGNKDIVEGLTYRLKK 223


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 417,585
Number of extensions: 16183
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 223
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 145
Effective length of database: 743,337
Effective search space: 107783865
Effective search space used: 107783865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)