BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2633.p
         (380 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094917|ref|YP_001099992.1| L-lactate dehydrogenase [Hermin...   546   e-157

>gi|134094917|ref|YP_001099992.1| L-lactate dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 381

 Score =  546 bits (1406), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/380 (68%), Positives = 316/380 (83%), Gaps = 4/380 (1%)

Query: 1   MPVMTCVEDFRLLAKKRVPKAFYDYADSGSYTESTYRANSRDLAALKLRQRVAINVDERS 60
           MPV+T +ED R+LA+KRVP+ FYDYADSGS+TESTYRANS D A +K RQRVA+N++ R+
Sbjct: 1   MPVITNIEDLRVLAQKRVPRMFYDYADSGSWTESTYRANSEDFARMKFRQRVAVNMENRT 60

Query: 61  TRSTMIGHDVTMPVAIAPTGLTGMQWANGEMLGAIAAEKFGIPFTLSTMSICSIEDVASV 120
            ++TM+G +V MPVAIAPTGLTGMQ A+GE+L A AAEKFGIPFTLSTMSICSIED+A+ 
Sbjct: 61  LKTTMVGQEVHMPVAIAPTGLTGMQHADGEILAARAAEKFGIPFTLSTMSICSIEDIAAH 120

Query: 121 TSKPFWFQLYVMRDRGFVKSLIERAKAAKCSALVLTLDLQILGQRHKDLKNGMSVPPKLT 180
           TSKPFWFQLYVM+DR F++ LIERAKAAKCSALVLTLDLQILGQRHKDLKNG+S PPKLT
Sbjct: 121 TSKPFWFQLYVMKDRPFIERLIERAKAAKCSALVLTLDLQILGQRHKDLKNGLSAPPKLT 180

Query: 181 LDTLLDLASKPGWALRALGG-RKTFGNLAGHIKGGEGAGGVQTLSKWTASQFDPTLNWDD 239
           +  +L++  KP W +  LG  R++FGN+ GH         + +LS WT+ QFD  L+W D
Sbjct: 181 IPNILNMMGKPRWCMGMLGTRRRSFGNIVGH---ASDVSDMSSLSAWTSQQFDLALSWKD 237

Query: 240 VAWIKQQWGGKLILKGILDVEDAKLAVQSGADAIVVSNHGGRQLDGAMSSIEALPAIAQA 299
           V WIK+ WGGKLI+KGI+D EDA+LAV SGADAI+VSNHGGRQLDGA+SSI ALP+I +A
Sbjct: 238 VEWIKKCWGGKLIIKGIMDAEDARLAVASGADAIIVSNHGGRQLDGALSSIAALPSIVEA 297

Query: 300 VGDQIEVWFDGGIRSGQDVLKAVALGARGTMIGRAFLYSLGAMGGEGVSQMLEIMRKELD 359
           VGDQIEV  DGGIRSGQDV+KA+ALGA+GT IGR+FLY LGAMG EGVS+ LEI+ +ELD
Sbjct: 298 VGDQIEVHMDGGIRSGQDVIKALALGAKGTYIGRSFLYGLGAMGEEGVSKCLEIIERELD 357

Query: 360 VSMALTGTKDIKDVGPQILI 379
           ++MA  G  D+K V  +ILI
Sbjct: 358 LTMAFCGLTDVKKVDRKILI 377


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 678,458
Number of extensions: 26340
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 297
Effective length of database: 726,862
Effective search space: 215878014
Effective search space used: 215878014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)