BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2632.p
         (443 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094963|ref|YP_001100038.1| putative squalene/phytoene dehy...   509   e-145

>gi|134094963|ref|YP_001100038.1| putative squalene/phytoene
           dehydrogenase; carotene 7,8-desaturase [Herminiimonas
           arsenicoxydans]
          Length = 449

 Score =  509 bits (1310), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/434 (61%), Positives = 317/434 (73%), Gaps = 6/434 (1%)

Query: 9   AVIGAGWAGCAAAVALAAGGHRVSLFEAARTLGGRARRVELDGQVLDNGQHILLGAYRAT 68
           AVIGAGWAGC AAV LA  GH+V+L+E++RTLGGRAR VE+ G++LDNGQHILLGAY  +
Sbjct: 13  AVIGAGWAGCTAAVELARAGHQVTLYESSRTLGGRARAVEMQGKILDNGQHILLGAYAES 72

Query: 69  LALMKQVGVDPARALLRLPLQMRYPLAAGSEGMDFVAPRLPAPWHLAVALWRAKGLARDD 128
           L L K +G+D  +ALLRLPLQMRYP  AG +GMDF+APRLPAP HL VAL RAKGL+  D
Sbjct: 73  LRLFKMLGIDTDQALLRLPLQMRYP--AGCDGMDFIAPRLPAPLHLLVALLRAKGLSGSD 130

Query: 129 KMALARFSTTARWMGWQLHQDCSVTELLERFEQTPRLIRLMWRPLCIAALNTAPEQASAQ 188
           KMALARFS+ ARWM WQL+ DCSV+ELL RF+QT RLI+LMW+PLCIAALNT PE+ASAQ
Sbjct: 131 KMALARFSSAARWMDWQLNTDCSVSELLHRFDQTERLIKLMWQPLCIAALNTPPERASAQ 190

Query: 189 VFLNVLRDSLGARRAASDMLIPRLDLGALLPDAAATYLEQRGALVHTGVMVGRLLPGSEA 248
           +FLNVLRDSLGARR ASDMLIPR+DL  L P  AA ++ Q G  + TG  V ++   ++ 
Sbjct: 191 IFLNVLRDSLGARRVASDMLIPRVDLTTLFPQQAANFVVQHGGTIKTGATVQKI--ANDN 248

Query: 249 HTWRLQDRAGESLGQFAGVVLATGPEAAAQLLAGQHDTRLLQALQHEPITTCYLQYPDSV 308
             W +     E   ++  V++AT    AA LLA       + A ++E ITTCYLQYP   
Sbjct: 249 RKWSVMLDKTED-AEYDAVIVATSATQAAILLADVTMNAAIPAFEYEAITTCYLQYPADT 307

Query: 309 RLPAPFLALADDAPRQAWGQFVFDRGQLG-GQAGCLAVVVSAAGQAIAEGHAALAAGITR 367
            L  PF AL DDA    WGQFVFDRGQL   Q+G LAVVVS +  AI  GH AL+A I  
Sbjct: 308 HLALPFHALTDDADSGCWGQFVFDRGQLDHTQSGLLAVVVSTSTSAIDIGHEALSAAIAA 367

Query: 368 QLATDFALPALATPQWRRVITEKRATFACTPGLQRPDNAAMPAGLALAGDYVAGDYPATL 427
           QLA    +PALA P+W R+I+EKRATF+CTPGLQRP        LA+AGDY+A DYPATL
Sbjct: 368 QLAHALQMPALAHPEWSRIISEKRATFSCTPGLQRPQEKTEFPHLAIAGDYLASDYPATL 427

Query: 428 EGAVRSGLAAARLL 441
           E AVRSG+ AA LL
Sbjct: 428 ESAVRSGVKAASLL 441


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 734,965
Number of extensions: 27692
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 358
Effective length of database: 720,272
Effective search space: 257857376
Effective search space used: 257857376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)