BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2631.p
         (277 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094962|ref|YP_001100037.1| putative phytoene synthase [Her...   449   e-128
gi|134094961|ref|YP_001100036.1| putative terpenoid synthase-rel...    96   2e-21

>gi|134094962|ref|YP_001100037.1| putative phytoene synthase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score =  449 bits (1154), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/277 (78%), Positives = 243/277 (87%)

Query: 1   MSPDEYCQQKAAASGSSFYYSFLFLPPPRRLAITALYAFCREVDDTVDEIEDPMVARTKL 60
           MSPD+YCQQKAA SGSSFYYSFLFLP  RR AITALYAFCREVDDTVD+  D  +ARTKL
Sbjct: 1   MSPDDYCQQKAAQSGSSFYYSFLFLPAERRRAITALYAFCREVDDTVDDCTDVSIARTKL 60

Query: 61  MWWRKEIAAMLEGQPTHPVTKALHPHMASYQLKGEHLQAIIDGMEMDLDQSRYLDYPGLQ 120
            WWR+E+AAM+ G PTHPVTKAL PH+ S+ L  +HL +IIDGMEMDLDQ+RYLD+PGLQ
Sbjct: 61  AWWRQEVAAMMAGAPTHPVTKALQPHLTSFALDNQHLLSIIDGMEMDLDQTRYLDFPGLQ 120

Query: 121 RYCWHVAGVVGVLSASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNE 180
           +YCWHVA VVG+LSA+IFG T P TL +AEKLGLAFQLTNIIRDVGED RKGRIYLPVNE
Sbjct: 121 KYCWHVASVVGILSANIFGVTNPQTLQYAEKLGLAFQLTNIIRDVGEDARKGRIYLPVNE 180

Query: 181 LQQFNVTAADILNARHSERFQALMKFQVERAQAVYDEAFALLPKEDRRAQRPGLMMAAIY 240
           LQQFNVTAADILNARHS+ F+ LM+FQ  RAQ +YDEAFALLPKEDRRAQRPGL+MAAIY
Sbjct: 181 LQQFNVTAADILNARHSDNFEKLMQFQAARAQKMYDEAFALLPKEDRRAQRPGLIMAAIY 240

Query: 241 RTLLDEIARDGYQVLNQRISLTPIRKLWLAWKTYVFG 277
           R +L+E+ RDG+ VL QRISLTPIRKLWLAW TYV G
Sbjct: 241 RAVLNEVERDGFHVLTQRISLTPIRKLWLAWITYVRG 277


>gi|134094961|ref|YP_001100036.1| putative terpenoid
           synthase-related protein [Herminiimonas arsenicoxydans]
          Length = 284

 Score = 95.9 bits (237), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 8/203 (3%)

Query: 17  SFYYSFLFLPPPRRLAITALYAFCREVDDTVDE----IEDPMVARTKLMWWRKEIAAMLE 72
           +F  + + LP   R A+  +YAF R  DD  DE     E+ + A T       +IAA   
Sbjct: 14  NFPVASILLPARLRPAVEIIYAFARSADDVADEGDASAEERLAALTAYENGLDQIAA--- 70

Query: 73  GQ-PTHPVTKALHPHMASYQLKGEHLQAIIDGMEMDLDQSRYLDYPGLQRYCWHVAGVVG 131
           GQ P  P+ + L   +A Y L  +  + ++   + D+  +RY D+  L  YC   A  VG
Sbjct: 71  GQTPDTPLFRELAKVIADYHLPLQPFRDLLSAFKQDVSTTRYADFSLLLDYCRRSANPVG 130

Query: 132 VLSASIFGHTQPGTLLFAEKLGLAFQLTNIIRDVGEDGRKGRIYLPVNELQQFNVTAADI 191
            L   ++G      L  ++ +  A QL N  +DV  D RK RIYLP  ++Q F V    I
Sbjct: 131 TLMLHLYGAANAENLRDSDAICSALQLINFWQDVAIDMRKARIYLPQEDMQTFRVGEEHI 190

Query: 192 LNARHSERFQALMKFQVERAQAV 214
              R  + ++ LM+F++ RA+++
Sbjct: 191 AGQRIDQAWRNLMQFEISRARSM 213


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 497,752
Number of extensions: 19272
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 197
Effective length of database: 736,747
Effective search space: 145139159
Effective search space used: 145139159
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)