BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2629.p
         (269 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094961|ref|YP_001100036.1| putative terpenoid synthase-rel...   381   e-107
gi|134094962|ref|YP_001100037.1| putative phytoene synthase [Her...   100   1e-22

>gi|134094961|ref|YP_001100036.1| putative terpenoid
           synthase-related protein [Herminiimonas arsenicoxydans]
          Length = 284

 Score =  381 bits (978), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/269 (71%), Positives = 219/269 (81%)

Query: 1   MAVDHYENFPVASLLLPARLRPAVAAIYAFARSADDIADEGEASSAERLAALQAYEAQLD 60
           MAVDHYENFPVAS+LLPARLRPAV  IYAFARSADD+ADEG+AS+ ERLAAL AYE  LD
Sbjct: 7   MAVDHYENFPVASILLPARLRPAVEIIYAFARSADDVADEGDASAEERLAALTAYENGLD 66

Query: 61  LIAARVSCTLPLLQRLQQTIAQYALPLQPLRDLLSAFRQDVVTTRYPHYQDLLDYCRRSA 120
            IAA  +   PL + L + IA Y LPLQP RDLLSAF+QDV TTRY  +  LLDYCRRSA
Sbjct: 67  QIAAGQTPDTPLFRELAKVIADYHLPLQPFRDLLSAFKQDVSTTRYADFSLLLDYCRRSA 126

Query: 121 NPVGTLMLHLYGAANEENLRDSDAICSALQLINFLQDIAIDWQKARIYLPLEDLERFGVS 180
           NPVGTLMLHLYGAAN ENLRDSDAICSALQLINF QD+AID +KARIYLP ED++ F V 
Sbjct: 127 NPVGTLMLHLYGAANAENLRDSDAICSALQLINFWQDVAIDMRKARIYLPQEDMQTFRVG 186

Query: 181 QDDIAQACVDLRWQQLMRFQTERARALMLAGAPLAKRLPGRIGLELRMVVQGGLRILERI 240
           ++ IA   +D  W+ LM+F+  RAR+++++GAPLA RLPGRIG ELR+VVQGGLRILERI
Sbjct: 187 EEHIAGQRIDQAWRNLMQFEISRARSMLISGAPLALRLPGRIGWELRLVVQGGLRILERI 246

Query: 241 EAVQGDVFHHRPKLGKLDWLLVGWRGLRM 269
           EAV  DVF HRPKLGK DWL + WR + M
Sbjct: 247 EAVDYDVFRHRPKLGKSDWLRLIWRAICM 275


>gi|134094962|ref|YP_001100037.1| putative phytoene synthase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score =  100 bits (248), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 128/264 (48%), Gaps = 14/264 (5%)

Query: 7   ENFPVASLLLPARLRPAVAAIYAFARSADDIADEGEASSAERLAALQAYEAQLDLIAARV 66
            +F  + L LPA  R A+ A+YAF R  DD  D+    S  R   L  +  ++  + A  
Sbjct: 16  SSFYYSFLFLPAERRRAITALYAFCREVDDTVDDCTDVSIAR-TKLAWWRQEVAAMMAGA 74

Query: 67  SCTLPLLQRLQQTIAQYALPLQPLRDLLSAFRQDVVTTRYPHYQDLLDYCRRSANPVGTL 126
             T P+ + LQ  +  +AL  Q L  ++     D+  TRY  +  L  YC   A+ VG L
Sbjct: 75  P-THPVTKALQPHLTSFALDNQHLLSIIDGMEMDLDQTRYLDFPGLQKYCWHVASVVGIL 133

Query: 127 MLHLYGAANEENLRDSDAICSALQLINFLQDIAIDWQKARIYLPLEDLERFGVSQDDIAQ 186
             +++G  N + L+ ++ +  A QL N ++D+  D +K RIYLP+ +L++F V+  DI  
Sbjct: 134 SANIFGVTNPQTLQYAEKLGLAFQLTNIIRDVGEDARKGRIYLPVNELQQFNVTAADILN 193

Query: 187 ACVDLRWQQLMRFQTERARALM---LAGAPLAKRLPGRIGLELRMVVQGGLRILERIEAV 243
           A     +++LM+FQ  RA+ +     A  P   R   R GL +  + +  L  +ER    
Sbjct: 194 ARHSDNFEKLMQFQAARAQKMYDEAFALLPKEDRRAQRPGLIMAAIYRAVLNEVER---- 249

Query: 244 QGDVFH---HRPKLGKLDWLLVGW 264
             D FH    R  L  +  L + W
Sbjct: 250 --DGFHVLTQRISLTPIRKLWLAW 271


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 461,371
Number of extensions: 17250
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 189
Effective length of database: 736,747
Effective search space: 139245183
Effective search space used: 139245183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)