BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2621.p
         (449 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094959|ref|YP_001100034.1| trigger factor [Herminiimonas a...   707   0.0  

>gi|134094959|ref|YP_001100034.1| trigger factor [Herminiimonas
           arsenicoxydans]
          Length = 448

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/448 (76%), Positives = 390/448 (87%), Gaps = 1/448 (0%)

Query: 1   MATAVETLSKLERRMTLSFPLADVQAEVEKRLKVRARTAKAPGFRPGKVPMKMVAAQFGY 60
           MATAVETL KLERR+T++ P+A+VQ EVEKRLKVRART KAPGFR GKVPMKMVA Q+GY
Sbjct: 1   MATAVETLDKLERRITITVPVAEVQTEVEKRLKVRARTVKAPGFRAGKVPMKMVAQQYGY 60

Query: 61  QVETEVLNDKVGRAFNDAAVENNLRVAGFPRIEPKTSEEAGEGKLAFDATFEVYPEVSLG 120
           Q+E EVLNDKVG+AF +A  EN LRVAG+P+IE K +++  EG LAF+ATFE+YPE+ +G
Sbjct: 61  QIENEVLNDKVGQAFGEATSENKLRVAGYPKIEAK-NDDVAEGTLAFNATFEIYPEIKVG 119

Query: 121 DLSGAEVEKTTASVSDAEIDKTIDILRKQRVHYHVKGEQGAHGDGGADQSAQNGDRVTVD 180
           DL+ AEVEKT   VSDAEIDKTIDILRKQRVHYHVKGEQ AHGDGG+D +A+N DRVT+D
Sbjct: 120 DLASAEVEKTIVEVSDAEIDKTIDILRKQRVHYHVKGEQSAHGDGGSDLTAKNSDRVTID 179

Query: 181 FVGKIDGVEFQGGKADAFPFVLGEGRMLPEFEAATIGLKVGEAKTFPLAFPEDYHGKDVA 240
           FVG I+GVEFQGGKA+ + FVLGEGRML EFEA TIGLKVGE+KTFPL+FP DYHG DVA
Sbjct: 180 FVGTINGVEFQGGKAEGYAFVLGEGRMLAEFEAGTIGLKVGESKTFPLSFPADYHGADVA 239

Query: 241 GKTAEFTITVKKIEWAHMPEVDAAFAQSLGIEDGDLTKMREDIKKNLEREVTARTKAKTK 300
           GKTAEFTIT+K+IEWAHMPEVDA FA+SLGIEDGDL KMR D+K+NLEREV+ R KA+TK
Sbjct: 240 GKTAEFTITLKQIEWAHMPEVDAEFAKSLGIEDGDLEKMRADVKQNLEREVSNRVKARTK 299

Query: 301 DSVMNALIKASELEVPKALIDQDVERLSEMARQDMAQRGMDPKGMQLPKELFTAQAERRV 360
           DSVM+ALIK SE +VPK LIDQ+ +RL E  RQDMAQRGM    +  P ELFT QAERRV
Sbjct: 300 DSVMDALIKISEFDVPKVLIDQETQRLMESTRQDMAQRGMKVSDLPFPPELFTEQAERRV 359

Query: 361 RLGLILAEVVKQNKLEATEEQVKAQIEDFAQSYEDPQQVLKYYFSDRRRLAEVEALVLEE 420
           RLGLILAEVVK N+L+A  EQVKAQ+E+FAQSYEDP QVLKYYFSDR RLAEVEALVLEE
Sbjct: 360 RLGLILAEVVKANELQAKPEQVKAQVEEFAQSYEDPTQVLKYYFSDRSRLAEVEALVLEE 419

Query: 421 NVVNYVLGKAKVSEKPVSFDELMGNQAQ 448
           NVVNYVLGKAKV++K V+FDELMGN AQ
Sbjct: 420 NVVNYVLGKAKVADKSVAFDELMGNNAQ 447


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 769,110
Number of extensions: 31360
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 364
Effective length of database: 720,272
Effective search space: 262179008
Effective search space used: 262179008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)