BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2619.p
         (421 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094957|ref|YP_001100032.1| ATP-dependent protease ATP-bind...   795   0.0  
gi|134096123|ref|YP_001101198.1| ATP-dependent protease ATP-bind...    98   9e-22

>gi|134094957|ref|YP_001100032.1| ATP-dependent protease ATP-binding
           subunit ClpX [Herminiimonas arsenicoxydans]
          Length = 422

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/421 (90%), Positives = 410/421 (97%)

Query: 1   MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEAASVESVTG 60
           MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEA+SVE++TG
Sbjct: 1   MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVETLTG 60

Query: 61  AKSDLPTPQEITDLLDQYVIGQATAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120
            ++DLPTPQE+ +LLDQYVIGQ +AKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG
Sbjct: 61  PRTDLPTPQELCELLDQYVIGQNSAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120

Query: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQKG 180
           PTGSGKTLLAQTLAR L+VPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVE+AQKG
Sbjct: 121 PTGSGKTLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVERAQKG 180

Query: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240
           IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID
Sbjct: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240

Query: 241 TTNIMFICGGAFDGLAKIISDRSEKSGIGFSASVKSQSQKSNSEVLLNAEPEDLVKFGLI 300
           TTNIMFICGGAFDGLAKIIS+RSEKSGIGFSA+VKS+ ++S S+V+L+ EPEDL+KFGLI
Sbjct: 241 TTNIMFICGGAFDGLAKIISERSEKSGIGFSATVKSREERSASQVMLDTEPEDLIKFGLI 300

Query: 301 PELVGRLPVIATLNELDEEALIQILIEPKNALIKQYAKLLQMEGAELEIRPAAMHAIAKK 360
           PELVGRLPV+ATL ELDEEALIQIL+EPKNALIKQY+KLLQMEGAELEIRPAA+ AIAKK
Sbjct: 301 PELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKK 360

Query: 361 ALARKTGARGLRSILEHALLDVMYELPSEQNVAKVVVDENTITNGAKPLLIYHDQPKVSG 420
           A+ARKTGARGLRSILEHALLDVMYELP+EQNV+KVV+DE TITNGAKPLLIYH+QPKVSG
Sbjct: 361 AIARKTGARGLRSILEHALLDVMYELPNEQNVSKVVIDEGTITNGAKPLLIYHEQPKVSG 420

Query: 421 G 421
            
Sbjct: 421 A 421


>gi|134096123|ref|YP_001101198.1| ATP-dependent protease ATP-binding
           subunit HslU [Herminiimonas arsenicoxydans]
          Length = 445

 Score = 97.8 bits (242), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 13/107 (12%)

Query: 67  TPQEITDLLDQYVIGQATAKRILSVAVYNHYKR------LKHLGKKDDVELAKSNILLVG 120
           TPQEI   LD++V+GQ  AKR +++A+ N ++R      L+H       E+   NIL++G
Sbjct: 2   TPQEIVSELDKHVVGQGNAKRAVAIALRNRWRRQQVAEPLRH-------EITPKNILMIG 54

Query: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLL 167
           PTG GKT +A+ LA++ + PF+  +AT  TE GYVG DV+ II+ L+
Sbjct: 55  PTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLI 101


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 707,058
Number of extensions: 27587
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 337
Effective length of database: 723,567
Effective search space: 243842079
Effective search space used: 243842079
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)