BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2618.p
         (802 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094956|ref|YP_001100031.1| DNA-binding ATP-dependent prote...  1494   0.0  

>gi|134094956|ref|YP_001100031.1| DNA-binding ATP-dependent protease
           La; heat shock K-protein [Herminiimonas arsenicoxydans]
          Length = 804

 Score = 1494 bits (3867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 735/804 (91%), Positives = 775/804 (96%), Gaps = 2/804 (0%)

Query: 1   MTTPILTEQSQLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAA 60
           MTT I TEQ+QLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAA
Sbjct: 1   MTTTISTEQTQLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEQGKSIMLAAQKAAA 60

Query: 61  KDEPSAEDIYEIGCVANILQMLKLPDGTVKVLVEGAQRARIHHISELETHFVADLTPVES 120
           KDEPSA+DIYEIGCVANILQMLKLPDGTVKVLVEGAQRARIHHISEL+THFVADLTP+ES
Sbjct: 61  KDEPSADDIYEIGCVANILQMLKLPDGTVKVLVEGAQRARIHHISELDTHFVADLTPIES 120

Query: 121 EQGDEAEVEAMRRTIVQQFDQYVKLNKKIPPEILTSLAGIDDAGRLADTIAAHLPLKLEQ 180
           E G+E+EVEAMRR IVQQFDQYVKLNKKIPPEILTSLAGIDDAGRLADTIAAHLPLKLEQ
Sbjct: 121 EAGEESEVEAMRRAIVQQFDQYVKLNKKIPPEILTSLAGIDDAGRLADTIAAHLPLKLEQ 180

Query: 181 KQVILEIFNVTKRYEHLLGQLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQK 240
           KQVILEIFNV KRYEHLLGQLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQK
Sbjct: 181 KQVILEIFNVAKRYEHLLGQLEGELDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQK 240

Query: 241 ELGEGEDGADLEELEKKIVAAKMPKEALEKAQSELKKLKLMSPMSAEATVVRNYIDTLVA 300
           ELGEGE+GADLEELEKK++AAKMPKEAL KAQ+ELKKLKLMSPMSAEATVVRNYID L+ 
Sbjct: 241 ELGEGEEGADLEELEKKVLAAKMPKEALVKAQNELKKLKLMSPMSAEATVVRNYIDILLG 300

Query: 301 LPWKKKSKVNNDLPNAEKVLEGDHYGLEKVKERILEYLAVQQRVDKLKAPILCFVGPPGV 360
           LPWKKKSKVNNDL NAEKVLE DHYGL+KVKERILEYLAVQQRVDKLKAPILCFVGPPGV
Sbjct: 301 LPWKKKSKVNNDLANAEKVLEDDHYGLDKVKERILEYLAVQQRVDKLKAPILCFVGPPGV 360

Query: 361 GKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLSKVGVRNPLF 420
           GKTSLGQSIARATNRKF+RMALGGVRDEAEIRGHRRTYIGSMPGKILQS+SK GVRNPLF
Sbjct: 361 GKTSLGQSIARATNRKFIRMALGGVRDEAEIRGHRRTYIGSMPGKILQSMSKAGVRNPLF 420

Query: 421 LLDEIDKLGMDFRGDPSSALLEVLDPEQNHTFSDHYIEVDFDLSDVMFVATSNSFNIPPA 480
           LLDEIDK+G DFRGDPSSALLEVLDPEQNHTFSDHY+EVDFDLSDVMFVATSNS+NIPPA
Sbjct: 421 LLDEIDKMGADFRGDPSSALLEVLDPEQNHTFSDHYVEVDFDLSDVMFVATSNSYNIPPA 480

Query: 481 LLDRMEVIRLSGYTEDEKTSIAQRYLLPKQIKNNGLKEGEISVAESAIRDIIRYYTREAG 540
           LLDRMEVIRLSGYTEDEKTSIAQRYLLPKQIKNNGLKEGEISVAESAIRDIIRYYTREAG
Sbjct: 481 LLDRMEVIRLSGYTEDEKTSIAQRYLLPKQIKNNGLKEGEISVAESAIRDIIRYYTREAG 540

Query: 541 VRSLEREVSKICRKVVKLLLLKKQEKKVTVTSRNLDKFLGVRRYDFGIAEKENQIGQVVG 600
           VRSLERE+SKICRKVVK+LLLKKQE+K+TVTS+N+DKFLGVR++DFG+AEKENQIGQVVG
Sbjct: 541 VRSLEREISKICRKVVKMLLLKKQERKITVTSKNIDKFLGVRQFDFGVAEKENQIGQVVG 600

Query: 601 LAWTEVGGDLLTIEAVNMPGKGQIIRTGTLGDVMKESIEAARTVVRSRARKLGIKSEVFE 660
           LAWTEVGGDLLTIEA+ MPGKG IIRTGTLGDVMKESIEAARTVVRSRA+KLGIK+++FE
Sbjct: 601 LAWTEVGGDLLTIEAMTMPGKGNIIRTGTLGDVMKESIEAARTVVRSRAKKLGIKADIFE 660

Query: 661 KSDIHIHVPEGATPKDGPSAGIAMTTALVSIFSGIPVRADVAMTGEITLRGEVLPIGGLK 720
           KSDIHIHVPEGATPKDGPSAG AMT A+VS+F+GIPVRADVAMTGEITLRGE+LPIGGLK
Sbjct: 661 KSDIHIHVPEGATPKDGPSAGAAMTLAMVSVFTGIPVRADVAMTGEITLRGEILPIGGLK 720

Query: 721 EKLLAAHRGGIKTVLIPEQNVKDLAEIPDNVKNKLEIIPVRWIDKVLEVALERQPVPLSE 780
           EKLLAAHRGGIKTVLIPEQNVKDL EIPDNVKNKLEI+PVRWIDKVLE+ALER PVPL++
Sbjct: 721 EKLLAAHRGGIKTVLIPEQNVKDLTEIPDNVKNKLEIVPVRWIDKVLEIALERAPVPLTD 780

Query: 781 DEAIVEAAVAPKEGA-TDP-VVKH 802
           +EA V  A   K  A TD  VVKH
Sbjct: 781 EEAAVVEAAVAKPSAPTDSGVVKH 804


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,377,462
Number of extensions: 55559
Number of successful extensions: 244
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 1
Length of query: 802
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 713
Effective length of database: 707,092
Effective search space: 504156596
Effective search space used: 504156596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)