BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2616.p (345 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 158 3e-40 gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 119 3e-28 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 82 5e-17 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 79 2e-16 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 158 bits (400), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 183/358 (51%), Gaps = 35/358 (9%) Query: 13 TLLCLCGSAAAQSSVAVYGVVDAGLTWESERHRAGSSTSL---VSGGNSASRLGFRGSEE 69 L G+A+AQSSV VYG+VD G+T S+ AG++ L SG SASR+GF+G+E+ Sbjct: 10 VLGAFAGAASAQSSVTVYGIVDMGIT--SQDTGAGANDRLNGVTSGNQSASRIGFKGTED 67 Query: 70 LGQGWKALFVLESGFSLDDGALGQ--GGLLWGRKSLVGLSGPYGTLTLGRQDSPLYDYAA 127 LG G KA FVLE + D G L Q G + R + VGLSG +G + LGRQ S + D Sbjct: 68 LGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGLSGNFGAVNLGRQVSAIKDAYD 127 Query: 128 PMDPL--SGALA-FTRIFTQANKYRRDN----NTIKYASPTLGGFKGQLAYSFGETAGAS 180 +DP G +A + IF A + DN N+IKY S + GFK Y+FGE AG + Sbjct: 128 AIDPFGDGGTIAPISAIFFNA-ALKGDNGRISNSIKYTSNSYSGFKFGAHYAFGEQAGRT 186 Query: 181 ASGRLLSAGLNYTRGASSSSLSMQNINSQAVGNNGIKTI-----RLVNLGTRYDFKVAAV 235 + L Y G + + + G G K + ++ LG YDF VA + Sbjct: 187 GADSNYGLNLGYANGPLNVQFGYMSGDDSTAGAPGFKPVKNSKDKMTFLGATYDFGVAKL 246 Query: 236 SLMMQTNKSNEGAKAMDS--RDFLAGVSVPLGAH-KISASVIVHKDR-----KQASGDAR 287 +K+ A +D+ R+++ GVS +GA I AS V+ R K D++ Sbjct: 247 HAAYGDSKNQPVAGNVDNKYRNYMLGVSAKVGAAGSIMASYTVNDTRTFGGVKANDRDSK 306 Query: 288 QLALGYTYGLSPRTHLYGGMAHISNNKSARFGLASLAEGGAPDGSDPMLYTAGVKHTF 345 + + Y + LS RT+LY G +H SN+K+A+ + G+ ++ GV+H F Sbjct: 307 RAGIMYAHDLSKRTNLYAGYSHTSNDKNAKLNALVADQSGS-------MFAVGVRHKF 357 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 119 bits (297), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 113/380 (29%), Positives = 174/380 (45%), Gaps = 63/380 (16%) Query: 20 SAAAQSSVAVYGVVDAGLTWESERHRAGSSTSLVSGGNSASRLGFRGSEELGQGWKALFV 79 +A AQ+ V +YG+ D + + S + A S+T + SG + SR+GF+G+E+LG G +A+F Sbjct: 22 NAGAQNGVTIYGIADVAMVYSSNQGGA-SNTYMRSGNLAGSRIGFKGTEDLGGGTQAIFQ 80 Query: 80 LESGFSLDDGALGQGGLLWGRKSLVGLSGP-YGTLTLGRQDSPLYDYAAPMDP---LSGA 135 LESGF+LD G + L+ R++ VG++ YG LT GRQ +P Y + P+ P L+GA Sbjct: 81 LESGFNLDTGEMSSSSTLFNRQAFVGINNTRYGALTAGRQYTPYYLFVGPIGPTNSLTGA 140 Query: 136 L-AFTRIFTQANKYRRDNNTIKYASPTLGGFKGQLAYSFGETAGASASGRLLSAGLNYTR 194 A + R NN+I Y SP G + FGETAG SGR +SA + Y Sbjct: 141 TGAHPGDIDGLDTTIRSNNSITYTSPVWNGLQVSALAGFGETAGDMGSGRTISAAIKYDI 200 Query: 195 GASSSSLSMQ------------------NINSQAVGNNGI--------------KTIRLV 222 + +L Q N N+ V NNG T+ V Sbjct: 201 NNWNFALGYQRLNNSNNPGGVWSPNASANFNTSPV-NNGYLSADSAQYLAGAARYTMGKV 259 Query: 223 NLG---TRYDFKVAAVSLMMQTNKSNEGAKAMDSRDFLAGVSV-PLGAHKISASVIVHKD 278 +G +R +++ SL Q D+ L G + P+ + S K Sbjct: 260 IVGANASRVEYRPNGNSLFTQ-------KATFDTLGLLTGYQMTPVFFVSVGYSYTKEKA 312 Query: 279 RKQASGDAR--QLALGYTYGLSPRTHLYGGMAH-ISNNKSARFG---------LASLAEG 326 S A+ QLAL TY S RT +Y A+ ++ + G + ++ Sbjct: 313 ANGISDPAKYHQLALEQTYSFSKRTAIYFLEAYQVAKGNTLGLGGSGPVRAVAVVGDSQN 372 Query: 327 GAP-DGSDPMLYTAGVKHTF 345 G P DG++ ++ G++H+F Sbjct: 373 GTPSDGANQAVFMVGIRHSF 392 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 81.6 bits (200), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 97/348 (27%), Positives = 141/348 (40%), Gaps = 66/348 (18%) Query: 20 SAAAQSSVAVYGVVDAGLTWESERHRAGSSTSLVSGGNSASRLGFRGSEELGQGWKALFV 79 +A AQSSV G VDA AGS + + S G S G +G+E LG G +A F Sbjct: 25 NALAQSSVQFVGTVDAFAGSLKNSGDAGSKSVVNSSGMETSWWGVKGTENLGGGLQAQFA 84 Query: 80 LESGFSLDDGALGQ--GGLLWGRKSLVGLSGPYGTLTLGRQDSPLYDYAAPMDPLSGALA 137 L S F D GA G+ ++ R + VGLSG +G +++GR +P + P G+ A Sbjct: 85 LSSFFRPDTGAQGRFDSDTMFSRDAHVGLSGSFGRVSVGRDLAPNFIPTLTFSPFGGSFA 144 Query: 138 FTRIF----TQANKYRRD------------NNTIKYASPTLGGFKGQLAYSFGETAGASA 181 F+ + T + YR +N I Y P LGGF L + FGE AG Sbjct: 145 FSPLELHTQTPSGSYRGQVWSPTVAGDTGWSNEIMYVMPKLGGFTTSLFFQFGEQAGKPG 204 Query: 182 SGRLLSAGLNYTRGASSSSLSMQNI------NSQAVGNNGIKTIRLVN------------ 223 A Y +G S Q++ +S G++ + T N Sbjct: 205 KNN-YGANTMYEQGPLSFGAYFQSVKVNNPLDSVTSGDSRVFTFTPYNQATGATYTLAAS 263 Query: 224 ------LGTRYDFKVAAV--SLMMQTNK----SNEGAKAMDSRDFLAGVSVPLGAHKISA 271 +G YD + + +L TN+ +N+ + S G SVP+G + Sbjct: 264 RNDTWFVGGAYDLQFMKLFGTLNYSTNRLIGIANDSQYDLKSNTVQLGTSVPVGKGSVLF 323 Query: 272 SVIVHKDRKQASGDARQL---------------ALGYTYGLSPRTHLY 304 S + +A GD + +LGY Y LS RT +Y Sbjct: 324 SWA--RTNVKADGDFSAVLGGAGGKSSIIRNTASLGYDYFLSKRTDVY 369 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 79.3 bits (194), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 148/351 (42%), Gaps = 45/351 (12%) Query: 23 AQSSVAVYGVVDAGLTWESERHRAGSSTSLV--SGGNSASRLGFRGSEELGQGWKALFVL 80 A SS+++YG +D+G+ + +G ST+ + +G +RLG +G E LG G F L Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGSTTKLGSNGEYYNNRLGIKGMENLGGGLNMHFHL 89 Query: 81 ESGFSLDDGAL-GQGGLLWGRKSLVGLSGPYGTLTLGRQDS----------PLYDYAAPM 129 ESGF+ G L + L+ R S +G++G +G+L GRQ S P + Sbjct: 90 ESGFNTGTGELDNKANRLFNRISSIGIAGSFGSLDFGRQPSVACKAVYAYEPFQYRYVHI 149 Query: 130 DPLSGALA------FTRIFTQANKYRRDNNTIKYASPTLGGFKGQLAYSFGETAGASASG 183 PL+GA+A +R F + R N + G F Y GE G++ + Sbjct: 150 IPLAGAVAGNLDGRVSRPFGTVDGPRFSNGAQYFGK--FGSFTASAEYIMGEVPGSNRNQ 207 Query: 184 RLLSAGLNYTRGASS--SSLSMQNINSQAVGNNGIKTIRLVNLGTRYDFKVAAVS--LMM 239 + GL Y G + + + QN N V + + G Y ++ + Sbjct: 208 AAKAVGLVYNDGTFTVGGAYTRQNPNIGTVAASDYREQNQTTFGGGYKIDALRITGGYLK 267 Query: 240 QTNKSNEGAKAM---DSRDFLAGVSVPLGAHKISASVIVHKDRKQASGDARQLALGYTYG 296 T AK + DF S+ G ++ + + ++ L +G TY Sbjct: 268 TTTAITSQAKNIWLGARYDFTPAASLTAGYYRTTLETAQSEIARR-----NLLIVGATYA 322 Query: 297 LSPRTHLYGGMAHISNNKSARFGLASLAEGGAPDGSDPML--YTAGVKHTF 345 LSPRT LY + +++ GLASL P GS +AG+ H F Sbjct: 323 LSPRTSLYADI-----DQAVLHGLASL-----PSGSQTRQTGISAGISHIF 363 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 591,252 Number of extensions: 22147 Number of successful extensions: 65 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 4 Length of query: 345 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 263 Effective length of database: 730,157 Effective search space: 192031291 Effective search space used: 192031291 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)