BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2615.p (260 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 221 2e-59 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 153 7e-39 gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding pr... 147 5e-37 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 147 6e-37 gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding pro... 137 5e-34 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 221 bits (564), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 113/250 (45%), Positives = 158/250 (63%), Gaps = 10/250 (4%) Query: 11 LVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILL 70 ++ +++V K +G+ +VL V G+VVV+ GPSGSGKSTL++ +N LE +G I + Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 71 DGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRER 130 DG +G + L R + GMVFQ F L+PHL+ +N+ + V R Sbjct: 61 DGISVGD----------PKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSE 110 Query: 131 GTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDPE 190 + L+ L++VGL A+ +P QLSGGQQQRVAIARALA+ P +LFDEPTSALDPE Sbjct: 111 EEAAERGLKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPE 170 Query: 191 LVGEVLATMRSLAEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISRPQHG 250 ++ EVL M LA+ G+TM+VVTHE+GFAR+ A+RVIFMD G ++E DE + Sbjct: 171 MINEVLDVMVGLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSD 230 Query: 251 RTRAFLSRFL 260 R R FL++ + Sbjct: 231 RARDFLAKII 240 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 153 bits (387), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 138/248 (55%), Gaps = 20/248 (8%) Query: 14 IRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILLDGE 73 +++++K+FG L + ++ GE+ +LGPSG GK+TLLR I LE D G +LLDGE Sbjct: 5 VKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGE 64 Query: 74 QIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEA----PLHVHHRE 129 R + R+ G VFQ + L+ H+T +N+ P E Sbjct: 65 DASARH--------------VRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSE 110 Query: 130 RGTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDP 189 ++++ +LLE V L A YP QLSGGQ+QR+A+ARALAV+P++LL DEP ALD Sbjct: 111 -SVIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDA 169 Query: 190 ELVGEVLATMRSLAEQ-GLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISRPQ 248 ++ E+ +R L ++ +T I VTH+ A E AD+++ M+ G V + G P +V + P Sbjct: 170 KVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPA 229 Query: 249 HGRTRAFL 256 FL Sbjct: 230 SPFVYGFL 237 >gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding protein pxtA [Herminiimonas arsenicoxydans] Length = 262 Score = 147 bits (371), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 98/239 (41%), Positives = 140/239 (58%), Gaps = 18/239 (7%) Query: 11 LVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILL 70 ++ + DV R+G L+ + +H G+ V+LG SG+GKSTLLRCIN + G I + Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 71 DGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRER 130 G +G Q+ R++ QA RR+TGMVFQQ L TALQNV+ L H R Sbjct: 61 VG--LGLLQN----RRVLQAH----RRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLR 110 Query: 131 GT--VEQE----ALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPT 184 + QE L+ L++VGL KA QLSGGQQQRV IARAL +P+L+L DEP Sbjct: 111 SLFPLSQEEQRIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPV 170 Query: 185 SALDPELVGEVLATMRSLA-EQGLTMIVVTHEIGFAREAADRVIFMDGGKVL-EAGPPD 241 ++LDP +VL +R + E G++ +V H++ A + +DR++ + GKV+ +A P D Sbjct: 171 ASLDPATSEKVLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVMFDAVPTD 229 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 147 bits (370), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 140/251 (55%), Gaps = 20/251 (7%) Query: 11 LVVIRDVHKRFGAHEVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYILL 70 L+ IR++ +RFG + V+ I + + GE +LGPSG GK+TLLR I + D G ILL Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 71 DGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRER 130 DG + + ++R VFQ + L+PH+T N+ PL + + + Sbjct: 63 DGVDL--------------TGVPPEQRVVRTVFQNYALFPHMTVAGNI-AFPLEMANTPK 107 Query: 131 GTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDPE 190 ++Q+ + LE V L A YP +LSGGQ+QRV+IARAL +P+LLL DEP SALD + Sbjct: 108 SEIKQKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQ 167 Query: 191 LVGEVLATMRSL-AEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEAGPPDEVISRPQH 249 L ++ + +L E G+T + VTH+ A + R+ M+ G + + P + S P Sbjct: 168 LREQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYP-- 225 Query: 250 GRTRAFLSRFL 260 R+R F++ F+ Sbjct: 226 -RSR-FVADFI 234 >gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 137 bits (345), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 133/228 (58%), Gaps = 12/228 (5%) Query: 11 LVVIRDVHKRFGAH-EVLKGIDIDVHTGEVVVILGPSGSGKSTLLRCINHLESIDQGYIL 69 ++ R V K++ + L I + V GE+V + GPSG+GKSTLL+ I +E G ++ Sbjct: 1 MIEFRQVSKKYAQNVTALSDITLSVDKGELVFLAGPSGAGKSTLLKMIAAIERPSAGTVI 60 Query: 70 LDGEQIGYRQHAGRLRKLSQAELSRQRRKTGMVFQQFNLYPHLTALQNVMEAPLHVHHRE 129 + IG +++G L RR G++FQQ L + L NVM PL V Sbjct: 61 VSDHDIGRIKNSG---------LPYLRRNLGLIFQQQRLLSDRSVLANVM-LPLIVCGAA 110 Query: 130 RGTVEQEALQLLEQVGLGAKAHAYPRQLSGGQQQRVAIARALAVKPQLLLFDEPTSALDP 189 R E+ A L++VGL KA + P+ LSGG+QQRV+IARA+ +PQ++L DEPT+ LD Sbjct: 111 RADAERRARAALDKVGLLDKAASAPQTLSGGEQQRVSIARAIVNRPQIILADEPTANLDR 170 Query: 190 ELVGEVLATMRSLAEQGLTMIVVTHEIGFAREAADRVIFMDGGKVLEA 237 E +VL +++ G+T ++ TH+ F + A RVI++D GK++E+ Sbjct: 171 ESANKVLDALKAFHAVGVTCLISTHDEQFL-DTATRVIYLDHGKIIES 217 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 495,870 Number of extensions: 20345 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 49 Length of query: 260 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 180 Effective length of database: 736,747 Effective search space: 132614460 Effective search space used: 132614460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)