BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2614.p
         (313 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...    86   2e-18
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    79   4e-16

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score = 86.3 bits (212), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 13/220 (5%)

Query: 66  PSVLRGLGVTLGLTAISMVLGSLLGLVLAIARLSRTSLLRYIAGLYIWFFRSTPLLVQLI 125
           P +L GL  TL LT  + + G L G +LA+ARLS    L ++A  Y+   RS PLL+ + 
Sbjct: 14  PYLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLMRSIPLLLVIF 73

Query: 126 FLYNMATLFPEISVGLPFGPTWLSWKTNDLITPLTAAIIGLTLNEAAYMAEIIRGGLLAV 185
           + Y +  +  +   G    P  L    +  IT          + EAAY  EI+R G+ ++
Sbjct: 74  WFYFLVPVVLQTITGSE-RPVQLGADRSAYIT--------FIMFEAAYFCEIMRAGIQSI 124

Query: 186 DPRQLETAQAFGASRWCALRRILIPQAMRSIVPPTGNQLISMLKATSLVSVIAMGDLLHS 245
              Q+  A A G S   A+R +++PQA R+++P    Q I + +  SLVS++ + D + +
Sbjct: 125 SKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGA 184

Query: 246 VQTVYNQTFEVIPL-LIVAVCWY---LTLTSLLNWVQSAI 281
              +  +   V+ + L VA+ ++     L+S++  +Q  I
Sbjct: 185 SVKIAQRDSRVVEMYLFVAIVYFVLSFALSSMVKQLQKRI 224


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 78.6 bits (192), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 9/218 (4%)

Query: 68  VLRGLGVTLGLTAISMVLGSLLGLVLAIARLSRTSLLRYIAGLYIWFFRSTPLLVQL-IF 126
           +L GLG TL +   + +   +LG ++ IAR +    L  + G Y+  FR+ PLLVQ  ++
Sbjct: 21  LLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLLVQFFVW 80

Query: 127 LYNMATLFPEISVGLPFGPTWLSWKTNDLITPLTAAIIGLTLNEAAYMAEIIRGGLLAVD 186
            + +  L P +        TW+    +  I     AII L    ++ +AE +R G+ ++ 
Sbjct: 81  YFVIPGLVPAVK-------TWVI-TLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLP 132

Query: 187 PRQLETAQAFGASRWCALRRILIPQAMRSIVPPTGNQLISMLKATSLVSVIAMGDLLHSV 246
             Q     A G +     R +L+P A R I+PP  ++L++++K T++   I + +L    
Sbjct: 133 RGQRNAGYALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRT 192

Query: 247 QTVYNQTFEVIPLLIVAVCWYLTLTSLLNWVQSAIERH 284
           + +   TF        A   Y+ +  L N V + +ER 
Sbjct: 193 REMGEMTFRYFEAFGAATLMYVVIAMLANRVMALVERR 230


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 510,077
Number of extensions: 17796
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 231
Effective length of database: 730,157
Effective search space: 168666267
Effective search space used: 168666267
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)