BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2612.p
         (266 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094100|ref|YP_001099175.1| putative Nitrilase [Herminiimon...   114   4e-27

>gi|134094100|ref|YP_001099175.1| putative Nitrilase [Herminiimonas
           arsenicoxydans]
          Length = 269

 Score =  114 bits (286), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 132/270 (48%), Gaps = 18/270 (6%)

Query: 1   MLKVALGQFAVAKTWQTNLGTCLSLMRRALEQEAQLLVLPEGILARDITDPDLVRKSAQA 60
           + +VA  Q     + + N+ T   L+  A  Q A L++LPE   A  + + D +  + Q 
Sbjct: 5   LARVAAIQMVSTPSVEENIVTARRLIADAASQGASLILLPEYWAAMGMHENDKLGLAEQI 64

Query: 61  LDGPFVSALCEATRGTPLTLVTCVHVPLDGL---RVANMLIVIRDACI-IARYQKLHLYD 116
             GP  S +  A R   + L+    +P+      +V N  +V   A   + RY K+HL+ 
Sbjct: 65  DAGPIQSFMAAAAREHSVWLIGGT-LPMAASAADKVLNTTMVYNPAGERVKRYDKIHLFS 123

Query: 117 AFTGQES----RNVEPGNEVPPLVEVGGMQVGVMTCYDLRFPELARRLALDGAQVLVLPA 172
              G ES    R +  G EV       G +VG+  CYDLRFPEL R  A+    ++V+PA
Sbjct: 124 FTRGTESYDEARTIAHGTEVTTFDAPFG-KVGLSVCYDLRFPELYR--AMGDCMLIVVPA 180

Query: 173 AWVKGPLKEMHWETLLRARAVENTTYLVAVGECG-ERN----IGCSMVIDPLGVPVVQAA 227
           A+     K  HWE LLRARA+EN  Y++A  + G  RN     G SM+IDP G      A
Sbjct: 181 AFTYTTGK-AHWEILLRARAIENQCYVLAAAQGGRHRNGRTTWGHSMLIDPWGEIKDVLA 239

Query: 228 EASTLVFATLDPARLAAARAVLPVLKNRRF 257
           E   LV   ++P  L   R  LP LK+R+ 
Sbjct: 240 EGEGLVIGDIEPHHLTGIRENLPALKHRKL 269


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 458,989
Number of extensions: 17372
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 186
Effective length of database: 736,747
Effective search space: 137034942
Effective search space used: 137034942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)