BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2610.p (446 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herm... 76 3e-15 gi|134095984|ref|YP_001101059.1| transcription regulator GntR [H... 64 2e-11 gi|134093921|ref|YP_001098996.1| MocR family transcriptional reg... 57 2e-09 gi|134094028|ref|YP_001099103.1| bifunctional transcriptional re... 57 2e-09 >gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 397 Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 9/236 (3%) Query: 161 LAVNGGFSGVHLTLKSLLLPGSVVAVEDPTAARVLDNLDHLGAEVVPVACDAEGPLPDSL 220 L V+G + L K L+ S V VE P+ L E V + D G LP+ + Sbjct: 103 LMVSGSQQALDLLGKVLIEEHSKVLVETPSYLGALQAFSVYQPEFVSIPTDDFGLLPEEV 162 Query: 221 AAALAKRPAAFFYQPRTHSVTGVSVSTARFEALRRLLLSTDLLIVEDDGLGALS--SAPP 278 A +A + P + TG ++S R AL L ++EDD GALS P Sbjct: 163 AK-IADGARLLYALPNFQNPTGRTMSVERRFALVETCARLGLPLIEDDPYGALSYRGEPL 221 Query: 279 LSMGCHFPERTIHITSYSKAFGPDLRVGVLSGPVELVRQIHGYRNFSDRWTSRILQEAMA 338 M P I++ S+SK P +R+G + PV LVR++ + +D TS++ Q + Sbjct: 222 PKMLTMNPNGVIYLGSFSKVLTPGIRLGYVVAPVPLVRKLEQAKQAADLHTSQLTQMVVY 281 Query: 339 FLLTDTQCLATVERARGIYAQRRQALVAALAQ---RGV--DCPAGDGLAIWLPVPS 389 + D + R +YA + Q ++ AL + GV + P G G+ IW+ +P Sbjct: 282 EAIKDGFLEKHIPSIRTLYANQCQVMLDALTEFFPAGVTWNKPEG-GMFIWVTLPE 336 >gi|134095984|ref|YP_001101059.1| transcription regulator GntR [Herminiimonas arsenicoxydans] Length = 470 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 126/310 (40%), Gaps = 33/310 (10%) Query: 30 IRAGAIPVGAKLPPVRDLADALGVSPATISSAWGALRKQRVIIGRGRNGAWV--NTNDVT 87 I+ G + +G +LP VR + + VSP+T+ A+ L + +I R R+G +V + + Sbjct: 15 IQEGVLRLGDRLPSVRQASASRDVSPSTVFQAYYLLEARGLIRARERSGYYVVGDVRKLP 74 Query: 88 PRPIRFETPGN----------FGEHLRAD-------LSLAVPDPALLPDLSHAFAAGAKV 130 P P + P E L + L A P P L P A A + V Sbjct: 75 PEPEQASQPDEDSSPVDISELVFEVLESSKMRDVVPLGSAFPSPLLFPLARLAKAMASSV 134 Query: 131 ASLN----VYERAPIVPALRAAAERHWP----YPAPAYLAV-NGGFSGVHLTLKSLLLPG 181 L+ V + P P LR + + P + + NG ++L L ++ PG Sbjct: 135 QQLDPWSTVDDLTPGNPQLRRQIALRYRADGLHVQPDEIVITNGALDALNLCLIAVTRPG 194 Query: 182 SVVAVEDPTAARVLDNLDHLGAEVVPVACD-AEGPLPDSLAAALAK-RPAAFFYQPRTHS 239 V VE PT L +L+ G + + V EG +LA L + +P A + + Sbjct: 195 DAVLVESPTFYAALQSLERNGLQAIEVPTHPREGMDLAALARVLERHQPKACWLMTNFQN 254 Query: 240 VTGVSVSTARFEALRRLLLSTDLLIVEDDGLGAL---SSAPPLSMGCHFPERTIHITSYS 296 G + + L LL D+ ++EDD G L P + +H +S+S Sbjct: 255 PLGSLMPDEKKRDLVALLSQHDIPLIEDDVYGELYFGDKRPAPAKAYDTKGLVMHCSSFS 314 Query: 297 KAFGPDLRVG 306 K P RVG Sbjct: 315 KCLAPGYRVG 324 >gi|134093921|ref|YP_001098996.1| MocR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 469 Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 103/404 (25%), Positives = 158/404 (39%), Gaps = 36/404 (8%) Query: 16 DRTTR-----GIALGTTALIRAGAIPVGAKLPPVRDLADALGVSPATISSAWGALRKQRV 70 DRT + I + I +G + G +LP + LA LGV+ T+ +A+ L ++ Sbjct: 10 DRTAKLSLSEQICVSICRAIESGLLAPGTRLPSWQGLAAQLGVARGTVQAAYERLSDSQM 69 Query: 71 IIGRGRNGAWV--NTNDVTPRPIRFETPGNFGEHLR------ADLSLAVPDPALLPDLSH 122 I G G V + +P PG F + + A L +P PD Sbjct: 70 IETFGAKGTRVAPRLHTTAGKP-EAPQPGAFMKTYQEMMAGPAIFQLGIPAMEGFPDKLF 128 Query: 123 AFAAGAKVASLNVYE-------------RAPIVPALRAAAERHWPYPAPAYLAVNGGFSG 169 A A + + + R + L + H +P ++ +G SG Sbjct: 129 ARARSSNLLKTGSFSSLVYPDPRGEIELRKEVAGYLSISRNLHC-FPEQVFI-TSGYSSG 186 Query: 170 VHLTLKSLLLPGSVVAVEDPTAARVLDNLDHLGAEVVPVACDAEGPLPDSLAAALAKRPA 229 + L L+ L L G V +E+P L+ +VPV DAEG L A A Sbjct: 187 LGLVLRVLGLDGRKVWMEEPGFLLTRKGLELARLNIVPVPVDAEG-LDVDYGIKNAADAA 245 Query: 230 AFFYQPRTHSVTGVSVSTARFEALRRLLLSTDLLIVEDDGLGALS----SAPPLSMGCHF 285 P + G ++S R L + + I+EDD L L AP L+ Sbjct: 246 LAVVTPGQQAPLGTTLSLRRRLQLLEWAAANNAWIIEDDYLSELQLEGRPAPALA-SLDE 304 Query: 286 PERTIHITSYSKAFGPDLRVGVLSGPVELVRQIHGYRNFSDRWTSRILQEAMAFLLTDTQ 345 +R IHI S+SK P LR+G + PVEL S ++Q A A + D Sbjct: 305 GKRVIHIGSFSKTISPGLRLGFVVVPVELAEAFSEIVATLAPAPSPVIQLATAQFMHDGH 364 Query: 346 CLATVERARGIYAQRRQALVAALAQRGVDCPAGDGLAIWLPVPS 389 + V R + +Y+ + L L R + GLA+ L +P+ Sbjct: 365 YIQRVRRLKRLYSAQSDGLCEQLRMRDAEWIKA-GLAVLLRLPA 407 >gi|134094028|ref|YP_001099103.1| bifunctional transcriptional regulator/amino transferase [Herminiimonas arsenicoxydans] Length = 486 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 92/412 (22%), Positives = 163/412 (39%), Gaps = 30/412 (7%) Query: 27 TALIRAGAIPVGAKLPPVRDLADALGVSPATISSAWGALRKQRVIIGRGRNGAWVN--TN 84 TA I + GA++P +R +D VS T+ A+ L ++ R +G +V T Sbjct: 40 TARIDDKLLRTGARMPSIRQFSDQHKVSRFTVVEAYDRLVAGGLLESRRGSGFYVRDRTP 99 Query: 85 DVTPRPIRFETPGN-------FGEHLRADLSLAVPDPALLPD-------LSHAFAAGAK- 129 + PR R T R +P LLP+ +++A A ++ Sbjct: 100 MLAPRAQRTNTARQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDADLVANALRAVSRQ 159 Query: 130 ---VASLNVYERAPIVPALRAA-AERHWPYPAPAYLAVNGGFSGVHLTLKSLLLPGSVVA 185 + N P+ L+ AE ++ G + L + + PG + Sbjct: 160 NLPLQYGNPQGFLPLRQQLQLKLAELEISATPDQFVTTLGVTQALDLVARHYIQPGDTIF 219 Query: 186 VEDPTAARVLDNLDHLGAEVVPVACDAEGPLPDSLAAALA-KRPAAFFYQPRTHSVTGVS 244 V+DP + + LGA+VV + +GP LA A RP F H+ T S Sbjct: 220 VDDPAWFLMFGSFAMLGAKVVGIPRLPDGPDIAQLAELAALHRPKLFVINSVLHNPTSTS 279 Query: 245 VSTARFEALRRLLLSTDLLIVEDDGLGAL---SSAPPLSMGCHFPE--RTIHITSYSKAF 299 +S A+ + ++ D +IVEDD + ++ P + + R I++ +SK Sbjct: 280 LSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGTTVQPATRIAALDQLNRVIYLGGFSKTL 339 Query: 300 GPDLRVGVLSGPVELVRQIHGYRNFSDRWTSRILQEAMAFLLTDTQCLATVERARGIYAQ 359 +LRVG ++ E+ + + + + T+ I + + +L++ +R R Sbjct: 340 AANLRVGFIATSPEIAKHLCDRKMLTTLTTTEITERVVYRILSEGHYRKHADRLRNKLDA 399 Query: 360 RRQALVAALAQRGVDCPAGD--GLAIWLPVPSEPYALVTMA-AHGYAVGAGS 408 R V + + G+ G+ +W V + AL A GY + GS Sbjct: 400 VRDKTVRQMERIGIKINISTPAGMFVWTDVGCDSNALTERAMEQGYLLAPGS 451 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 796,622 Number of extensions: 30943 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 4 Length of query: 446 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 361 Effective length of database: 720,272 Effective search space: 260018192 Effective search space used: 260018192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)