BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2609.p (547 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 363 e-102 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 358 e-100 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 358 e-100 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 335 5e-93 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 328 4e-91 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 363 bits (933), Expect = e-102, Method: Compositional matrix adjust. Identities = 239/521 (45%), Positives = 335/521 (64%), Gaps = 18/521 (3%) Query: 1 MKLANFNIGVRLGGAFAVVLLLIVVTAMVGI-RNQSSNNAEINSIVNEKYQLIALSNQIK 59 M+ N IGVRLG AF ++L+L+ ++G+ R Q A +++ E+ + Q Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKA---TVLMEEATIKERLAQQW 57 Query: 60 NNGYKANAVLSNILLATT-PEASAKYMDEYAGLRKANTEAYQKLEGLLDSDKTKALYAEQ 118 G + N V + + T+ PE E + + A ++ +LE L+ S + K L A Sbjct: 58 IKGIETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATV 117 Query: 119 TSARSAYGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKMVNSLAKEMVNDS 178 R+ Y A+R +++ + AE M Y V+ +VN+ +N+ Sbjct: 118 AEKRATY-TAIRDDVMNLREARGAELQNAIANKMKPAADAYIQSVEAVVNA----QINNF 172 Query: 179 LEAAEEGRMAVIQ------MIVLAGVAVVLASVIGVLITRSITAPVRHAVMLAETVAQGD 232 +A +GR+ I +IVL VA+ L V+ ++TRSIT P+ +AV +A VA GD Sbjct: 173 EDA--KGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGD 230 Query: 233 LSYRLQANGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDRTE 292 L+ R+ + KDE +LL AL+ M+D+L +++ VR+G I A+ ++A GN+ LS RTE Sbjct: 231 LTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTE 290 Query: 293 QQASSLEETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAIST 352 +QASSLEETAS+ME+LTS V+QNADNARQA++LAV+AS VA +GG V +VV+ M I+T Sbjct: 291 EQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINT 350 Query: 353 SSGKIADIITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAAKE 412 S+ KI DII VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVR LAQRSA AAKE Sbjct: 351 SARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKE 410 Query: 413 IKSLIEGSVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQINQA 472 IK+LI+ SV+ V GS +V + T+ EV+ S+K TD++ +I A+S+EQS GIEQ+NQA Sbjct: 411 IKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQA 470 Query: 473 ISQMDQMTQENSALVEQNAAAAKALQSQAEQLSALMGRFKL 513 I QMDQ+TQ+N+ALVE+ AAAA++L QA L+ + FKL Sbjct: 471 IGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 358 bits (920), Expect = e-100, Method: Compositional matrix adjust. Identities = 249/523 (47%), Positives = 338/523 (64%), Gaps = 18/523 (3%) Query: 1 MKLANFNIGVRLGGAFAVVLLLIVVTAMVGI-RNQSSNNAEINSIVNEKYQLIALSNQIK 59 MK+ N IGVRLG AFAVVLLL+ ++G+ R Q A + + E + LS Q Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVR--MEEAAEQERLSIQW- 57 Query: 60 NNGYKANAVLSNILL-ATTPEASAKYMDEYAGLRKANTEAYQKLEGLLDSDKTKALYAEQ 118 + G ANA+ + + +T E ++ +E T+ KLE L+ S++ K L + Sbjct: 58 HAGNSANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAV 117 Query: 119 TSARSAYGVAVRKFFALMKDEQRA---EATTLYQGDMSRLQGEYFVMVDKMVNS-----L 170 R+ Y ++ F L D A EA + M Y V +V+ L Sbjct: 118 GDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFL 177 Query: 171 AKEMVNDSLEAAEEGRMAVIQMIVLAGVAVVLASVIGVLITRSITAPVRHAVMLAETVAQ 230 + D+L A+ GRM ++ L +A+ L++++ L++RSIT P+ +AV +A TVA Sbjct: 178 EAKTEVDNLYAS--GRMF---LLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAG 232 Query: 231 GDLSYRLQANGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMSLSDR 290 GDL R++ N DE +LL AL+ M+D L +VS VR G I A+ ++A GN+ LS R Sbjct: 233 GDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSR 292 Query: 291 TEQQASSLEETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNIMSAI 350 TE+QASSLEETAS+ME+LTS V+QNADNARQA++LAVSAS VA +GG V QVV+ M I Sbjct: 293 TEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDI 352 Query: 351 STSSGKIADIITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAVAA 410 ++S+ KI DII VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVR LAQRSA AA Sbjct: 353 NSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAA 412 Query: 411 KEIKSLIEGSVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGIEQIN 470 KEIK+LI SV+ V GS +V + T++EV+ S+K TD++++I A+S+EQS GIEQ+N Sbjct: 413 KEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVN 472 Query: 471 QAISQMDQMTQENSALVEQNAAAAKALQSQAEQLSALMGRFKL 513 QAI QMDQ+TQ+N+ALVE+ AAAA++L QA +L+ + FKL Sbjct: 473 QAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 358 bits (920), Expect = e-100, Method: Compositional matrix adjust. Identities = 247/545 (45%), Positives = 340/545 (62%), Gaps = 31/545 (5%) Query: 1 MKLANFNIGVRLGGAFAVVLLLIVVTAMVGIRNQSSNNAEINSIVNEKYQL-IALSNQIK 59 M++AN IG RLG F ++LLL+ GI + N +V++ + + N + Sbjct: 1 MRIANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLL 60 Query: 60 NNGYKANAVLSNILLATTPEASAKYMDEYAGLRKANTEAYQKLEGLLDSDKTKALYAEQT 119 A+ L+ ++ A+ PE+ + K TE + +E ++SDK K L+AE Sbjct: 61 GTSVNASRTLA-LVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVA 119 Query: 120 SARSAYGVAVRKFFALMK------------DEQRAEATTLYQGDMSRLQGEYFVMVDKMV 167 RSAY + +RK +K D + A Y + + G Y V Sbjct: 120 KKRSAY-IDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEV---- 174 Query: 168 NSLAKEMVNDSLEAAEEGRMAVIQMIVLAGVAVVLASVIGVLITRSITAPVRHAVMLAET 227 LA E + D + GRMA +I+ A +A++L ++I +T IT P+ A+ +AE+ Sbjct: 175 -KLADESITDDYLS---GRMA---LIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAES 227 Query: 228 VAQGDLSYRLQ-ANGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMS 286 VA+GDL+ R A +DE LL AL M NL TV+ +R GT I A+ E+A GN+ Sbjct: 228 VAEGDLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLD 287 Query: 287 LSDRTEQQASSLEETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNI 346 LS RTEQQASSLEETAS+ME+LTS V+QNADN+RQA++LAV+AS VAV+GGA V QVV+ Sbjct: 288 LSSRTEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDT 347 Query: 347 MSAISTSSGKIADIITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRS 406 M AI+ S+ KI DII VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVA+EVR LAQRS Sbjct: 348 MGAINNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRS 407 Query: 407 AVAAKEIKSLIEGSVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGI 466 A AAKEIK+LI SV V AGS +V + T+DE++ +K D++ +I+A+S+EQS+GI Sbjct: 408 AAAAKEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGI 467 Query: 467 EQINQAISQMDQMTQENSALVEQNAAAAKALQSQAEQLSALMGRFKLSELLTHGTTHSQS 526 EQ+NQA+SQMDQ+TQ+N+ALVE+ AAAA++LQ QA L+ + F++ G +QS Sbjct: 468 EQVNQAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVG----SGYATAQS 523 Query: 527 GKARS 531 R+ Sbjct: 524 AAPRT 528 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 335 bits (858), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 229/527 (43%), Positives = 325/527 (61%), Gaps = 30/527 (5%) Query: 3 LANFNIGVRLGGAFAVVLLLIVVTAMVGIRN-QSSNNAEINSIVNEKYQLIALSNQIKNN 61 L N +I RL + ++++V +GI Q++NN N VN+ A+ + + Sbjct: 2 LKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMM-TR 60 Query: 62 GYKANAVLSNILLATTPEASAKYMDEYAGLRKANTEAYQKLEGL-LDSDKTKALYAEQTS 120 +A A L+ + + E S + + + E ++K L +++ + + + E T+ Sbjct: 61 LLQARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVTA 120 Query: 121 ARSAYGVAVRKFFALMKDEQRAEATTLYQGDMSRLQGEYFVMVDKM---VNSLAK---EM 174 R Y +K+ ++ L G ++ ++V+KM SL K E+ Sbjct: 121 KRIRY----------LKEAEQGLIAALRAGRNEEVED---ILVNKMPPLFQSLTKSTDEL 167 Query: 175 VNDSLEAAEEG---RMAVIQMIVLAGVAVVLASVIGV-----LITRSITAPVRHAVMLAE 226 V +++A G + + V VL +IGV + R+IT P++ ++ + Sbjct: 168 VELQMKSAATGYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFD 227 Query: 227 TVAQGDLSYRLQANGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAARELAQGNMS 286 T+A GDL+ ++ ++E+ L+L LQ M L DTV+ VR G+ AI A E+A GN+ Sbjct: 228 TIASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLD 287 Query: 287 LSDRTEQQASSLEETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASVEQVVNI 346 LS RTEQQA+SLEETAS+ME+LTS V+QN DNARQA++LA SAS VAV+GGA V VVN Sbjct: 288 LSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNT 347 Query: 347 MSAISTSSGKIADIITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVRGLAQRS 406 M AI+TS+ KI DII VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVR LAQRS Sbjct: 348 MDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 407 Query: 407 AVAAKEIKSLIEGSVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSKEQSEGI 466 A AAKEIK LI+ SVN V AG+ +V + T+ EV+ S+K TD++++I A+S+EQS GI Sbjct: 408 AAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGI 467 Query: 467 EQINQAISQMDQMTQENSALVEQNAAAAKALQSQAEQLSALMGRFKL 513 EQ+N AI QMD++TQ+N+ALVEQ AAAA +L+ QA LS ++ FKL Sbjct: 468 EQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKL 514 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 328 bits (841), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 233/533 (43%), Positives = 327/533 (61%), Gaps = 38/533 (7%) Query: 3 LANFNIGVRLGGAFAVVLLLIVVTAMVGIRNQSSNNAEINSIVNEKYQLIALSNQIKNNG 62 N +G +L +F + + + A +GI N N + I N+ +L+ LS IK+ Sbjct: 2 FKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQ--ELMGLS-YIKD-- 56 Query: 63 YKANAVL-------SNILLATTPEASAKYMDEYAGLRKANTEAYQKLEGLLDSDKTKALY 115 AN L N+LL+TT E + + E K + L SD KAL+ Sbjct: 57 --ANIDLLFIGRARGNVLLSTTEEERTLNKENIKKYLASAKENLAKAQPLFVSDSAKALF 114 Query: 116 AEQTSARSAYGVAVRKFFALMKDE---QR-AEATTLYQGDMSRLQGEYFVMVDKMVNSLA 171 A+ + Y + + AL E QR AE TT +RL +D ++ L+ Sbjct: 115 AKYATVSQDYEKEMWRALALADKEPLQQRSAELTTSMA--QTRLHAN---TLDNVLTELS 169 Query: 172 KEMVNDSLEAAEE-------GRMAVIQMIVLAGVAVVLASVIGVLITRSITAPV----RH 220 K+ + +A E R ++ +++L+ + +L +GVLITR++ + + Sbjct: 170 KQKEVRAAQAHVETEQLYDSSRAFMVLLVILSAFSGIL---LGVLITRNLKGQLGGEPNY 226 Query: 221 AVMLAETVAQGDLSYRLQANGKDEISRLLLALQHMSDNLHDTVSNVRNGTSAIDMAAREL 280 A +A +A GDL+ + KD+ S +L A++ M D+L VS VR+GT I A+ ++ Sbjct: 227 AAGVAARIAAGDLTVAIDLRSKDQTS-MLFAMREMRDSLASIVSQVRSGTDTITTASGQI 285 Query: 281 AQGNMSLSDRTEQQASSLEETASAMEQLTSAVRQNADNARQASELAVSASDVAVRGGASV 340 A GN+ LS RTE+QAS+LEETAS+ME++TS V+QNA+N++QAS LAV AS A+RGGA V Sbjct: 286 AAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVV 345 Query: 341 EQVVNIMSAISTSSGKIADIITVIDGIAFQTNLLALNAAVEAARAGEHGRGFAVVASEVR 400 QVV+ M +I+ SS KI DII VIDGIAFQTN+LALNAAVEAARAGE GRGFAVVASEVR Sbjct: 346 SQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 405 Query: 401 GLAQRSAVAAKEIKSLIEGSVNHVKAGSGIVEQTVATIDEVIASIKHATDLITDISASSK 460 LAQRSA AAKEIK LI SV V AGS +VEQ T+ E++ I+ D+++DI+A+ + Sbjct: 406 SLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGR 465 Query: 461 EQSEGIEQINQAISQMDQMTQENSALVEQNAAAAKALQSQAEQLSALMGRFKL 513 EQS GIEQ+NQAI+QMD++TQ+N+ALVE+ AAA+++LQ QA LS ++ FKL Sbjct: 466 EQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKL 518 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.124 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 721,861 Number of extensions: 22771 Number of successful extensions: 162 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 15 Length of query: 547 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 461 Effective length of database: 716,977 Effective search space: 330526397 Effective search space used: 330526397 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)